Detail information of AT1G36160_circ_g.3


General Information
CircRNA Name AT1G36160_circ_g.3
ID in PlantcircBase ath_circ_005766
Alias 1:13534689-13535317
Organism Arabidpsis thaliana
Position chr1: 13534689-13535317  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G36160
Parent gene annotation Acetyl-CoA carboxylase 1
Parent gene strand +
Alternative splicing AT1G36160_circ_g.2 AT1G36160_circ_g.4 1_circ_ag.5 1_circ_ag.6 AT1G36160_circ_g.7 1_circ_ag.8 1_circ_ag.9 1_circ_ag.10 AT1G36160_circ_g.11 1_circ_ag.12 1_circ_ag.13 AT1G36160_circ_g.14 1_circ_ag.15 AT1G36160_circ_g.16 1_circ_ag.17 AT1G36160_circ_g.18 1_circ_ag.19 AT1G36160_circ_g.20 1_circ_ag.21 1_circ_ag.22 AT1G36160_circ_g.23 AT1G36160_circ_g.24 AT1G36160_circ_g.25 AT1G36160_circ_g.26 1_circ_ag.27 AT1G36160_circ_g.28 AT1G36160_circ_g.29 1_circ_ag.30 AT1G36160_circ_g.31 AT1G36160_circ_g.32 1_circ_ag.33 AT1G36160_circ_g.34 AT1G36160_circ_g.35 1_circ_ag.36 AT1G36160_circ_g.37 1_circ_ag.38 AT1G36160_circ_g.39 AT1G36160_circ_g.40 AT1G36160_circ_g.41 1_circ_ag.42 AT1G36160_circ_g.43 1_circ_ag.44 1_circ_ag.45 AT1G36180_circ_g.1 AT1G36180_circ_g.2
Support reads 1/1
Tissues seedling;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G36160.2:3
AT1G36160.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTATAGGTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCA
GGCTCACCAATATTCATAATGAAGGTTGCGTCACAGatggctgaagtaacacgcgtggatgcag
tttggcctggttggggtcatgcatctgaaaaccccgaattacctgatgccctagatgcaaaagg
aatcatat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 462
Transcript exons: 13534689-13534895,13534982-13535143,13535225-13535317
ATGGCTGAAGTAACACGCGTGGATGCAGTTTGGCCTGGTTGGGGTCATGCATCTGAAAACCCCG
AATTACCTGATGCCCTAGATGCAAAAGGAATCATATTTCTTGGTCCTCCAGCATCTTCAATGGC
AGCACTGGGAGATAAGATTGGTTCTTCGTTGATTGCACAAGCTGCTGATGTACCCACTCTGCCA
TGGAGTGGTTCCCATGTTAAAATACCTCCTAATAGCAACTTGGTAACCATCCCAGAGGAGATCT
ACCGGCAAGCATGTGTCTACACAACTGAAGAAGCGATTGCTAGCTGTCAAGTTGTCGGTTACCC
AGCAATGATCAAAGCATCGTGGGGTGGTGGTGGTAAAGGAATCAGGAAGGTTCATAATGATGAT
GAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGA
AGGTTGCGTCACAG

Transcript length: 467
Transcript exons: 13534689-13534721,13534756-13534856,13534869-13534897,13
534982-13535142,13535175-13535317
ATGGCTGAAGTAACACGCGTGGATGCAGTTTGGTACCTGATGCCCTAGATGCAAAAGGAATCAT
ATTTCTTGGTCCTCCAGCATCTTCAATGGCAGCACTGGGAGATAAGATTGGTTCTTCGTTGATT
GCACAACCCACTCTGCCATGGAGTGGTTCCCATGTGTTAAAATACCTCCTAATAGCAACTTGGT
AACCATCCCAGAGGAGATCTACCGGCAAGCATGTGTCTACACAACTGAAGAAGCGATTGCTAGC
TGTCAAGTTGTCGGTTACCCAGCAATGATCAAAGCATCGTGGGGTGGTGGTGGTAAAGGAATCA
GGAAGGACTAAGCCGATTACTATATAAGTACTTATTCTGGTTTTAAATTTATAGGTTCATAATG
ATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCAT
AATGAAGGTTGCGTCACAG

Genomic sequence ATGGCTGAAGTAACACGCGTGGATGCAGTTTGGCCTGGTTGGGGTCATGCATCTGAAAACCCCG
AATTACCTGATGCCCTAGATGCAAAAGGAATCATATTTCTTGGTCCTCCAGCATCTTCAATGGC
AGCACTGGGAGATAAGATTGGTTCTTCGTTGATTGCACAAGCTGCTGATGTACCCACTCTGCCA
TGGAGTGGTTCCCATGTAAGTAAATTTACTCTTGTTAAGCTTAGCTTGTGTACCAGAGGTATAT
ATTTTCATTTTTATATACTGAATTCCTATGTTTTCAGGTTAAAATACCTCCTAATAGCAACTTG
GTAACCATCCCAGAGGAGATCTACCGGCAAGCATGTGTCTACACAACTGAAGAAGCGATTGCTA
GCTGTCAAGTTGTCGGTTACCCAGCAATGATCAAAGCATCGTGGGGTGGTGGTGGTAAAGGAAT
CAGGAAGGTCAGCTTCTGTAGATATGCCTTTTGATTGTGGACTAAGCCGATTACTATATAAGTA
CTTATTCTGGTTTTAAATTTATAGGTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAG
TTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.456258155
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020