Detail information of Zm00001d018939_circ_ig.1


General Information
CircRNA Name Zm00001d018939_circ_ig.1
ID in PlantcircBase zma_circ_009224
Alias Zm07circ00012, ZmciR317
Organism Zea mays
Position chr7: 9879995-9884578  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf, endosperm
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCTGTAATCTCACATTTCTTTTTTTTTTATATCTGAACAGGGATTATGTGCCAGTTTCAGTTT
TTGGTAACAGTCTACAGGACTTTTAGACATTCAAAGgtcctatgaaaacaatatggctctgtat
ggttggtgtccgcagcttgccgtaagtcaccatgtctaagactatctctagcagtttatctcca
tctcctat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCCTATGAAAACAATATGGCTCTGTATGGTTGGTGTCCGCAGCTTGCCGTAAGTCACCATGTC
TAAGACTATCTCTAGCAGTTTATCTCCATCTCCTATTTCAAACTCTGTTTTGTAAATAGTGTGT
TCTATAGTGTAAAATAGTTTTTTGCAAGGTCATATGCCCAATCTCTCGGCCATAGCCTAAGGGC
ATGTTTGAAAGTAAAGTATTTTTATAGTTTCTAGTCAATACCATTGTTTTTAGTAATACTGTAG
TATTTTATGCCTTTATGGTATAGGTGTTTTATTGTATTCTTGAAAACAATGTTTTCAAAACATC
GTATTTTAGATACCATAATATTTTTGAAATATTGGAAACTCCACTCATACCCAAAGTTTTATGG
CTAGCTTTTGGCTAAAATGTTGTATCCAAACAATGTTTTTCAAAATCATGGCATTTTAGAGCTA
GTCAAAACTACAGTATTGTCATGACAATTATAAAATATAGTATTATAAAACCATGGTTTTAAGA
AACGTTGTTGCCAAACATGCCCTAAGATGTCGTGTGTGCTCAGAGTCTATTTGGTTGCTTACTA
AGAGTATGCTCTTGCATATCTTAAAAAATGAATCTAAAATATGATATTTGTTATAGAGCAGCTT
TACTAAGGCCTCGTTTGGTTTGAGGAACTTAAGATTAGTCCCTCCATTTTAGTCTCATTTAGTC
CCTAAATAGCTAAACAGTGGGACTAAAATAGGGACTAAACTGCTTTAGTCTCTAGTCCCTCAAC
TTAACGGATGACTAAATGAGACTAAACCATATTAATTCCATCTTCTGTCCCTCATTTATTTCAG
TTCCACTAATGGCGGAAGAATGTTAAGGACATTTTAGTCTTCTTATGAGTCTTTTAATGCGTTC
TGAATATTTTTAGTCCTTGCAAACCAAACAGGGTAGTAATTTTAGTCATCTTTTGTCCCTCATT
TATTTGATTTTTACAGCATTTTAAGGGTCTTATTGCACAATTTGGTTCTTTTATGTGGTTTTAG
ATAAGGATAGGGAGTTGGGCGAGGCACACGCGAACATAAAGGCGCTGCGGCTCTCGGAGAGGGC
ATGGGAGAAGGTCGTCGAGGAGGTAACTTTTGAATGTTCTTCATGCTTGTGTAAAGACTTCTTA
TTCTATTGTGAGTAAGCACCTGTATTATTTCTTGACAATGCGAACTTTGTTTTGAAGAACCAGT
CACATCTTGTTAGTACTGTCAGGGCCTAAGGAGGCCCATGGAGGGGCTGCGGTAGCAGCAGCGA
TGGGTCCTCTAAGGAGGATTAGATAAGGGTAGTTAGAGATAAGATTAGTTGAGATTATCTAGGA
GATTAGTTGAGATTATCTAGGAAGGTTATCAGTTAGTAGTTGTTGAGAGTTTTTAGGAGAGTTT
TAAGGAGATAAGGATCTCTAGCTAGATAGGGACGGTCAGCTGGCCTATTTATGTAATCAATGAA
TGAGAAAATAAAGTAGGCAAGAATTAGAAGGGACAAACCCTCCTCTTGCTCGGCCGTGGGCAGA
GGCCCCCGGCCGACGTTCCTGCCCATCGATACCCCTCTCCAATCCCTCACCGATCTAGCGACCA
TAACATCTGGTATCGGCTAGCTTGGGTTTCGATCTGATCCCATGGCTTCTGCTGCCAATTTCGC
GGCGTCGTCTTGGCAATCGGCGTCCCCATCTCCATGGACAATGCCACATGTCACCTTCGTCACG
CCGTCCTGGCAACCGACGTCCCCATCTCCATGGGCTACGCCGCATGCCACCTTCGTCACGCCAT
CCTGGCAATCGGCGTCCCTATCTCCATGGGCAGCATCGCCTGCCAATTTTGTCACCACATCCTG
GACGTCGACATGCCCATCCCCAGGGACAACGCCAAATTTCATCACATCATCTTCGTTGACGGCG
TCTCCATCCCCATGGGCGACGCCACTAGGGGCAGCCACGACTCAGCAATCACCAGCTCCATCGA
TGGGGGATTTGTGGACCAACATAAGGGCTGATCTCACAAAGATGCAAGCCACGCTCCAGAAGGT
TGAGCAAGGGCTGCTGCAAATCAAGGCAGCAGTGCAACATGAGCAGCACCAACTGGCGTTGTCC
GCACGGCTCCAGACGTCGGCGGCTGTGGGCATACAAGCTGCTGCTCGTGGCTTCCTTGCACGAC
GGAGAGTGCGGGAGATGCGCCGGCAGATGCTCGAGGCAGCCTTGGTGACGGTTGACCTCGGCAC
ACAGGGGCCCAACCTCGCCATGTCGGACGGCCATCAGCAGCAGCACCGGGCCGCTATCTCCAAG
TGCGAGCATGGTATGTGTCCCGCGGGCGACGAACTTCAACTCTACGACAGCGGCAGTAGGGAAG
GCACTCCTCTCGTCATCGGCAAGGGCGCACTATTTAGCGCCACCACATTTCTCTACCGTCCGCC
ACGAGGGCGCCTCCGCTGGTTATTGTTGCGACCTACGCCAGGTGCCCGTCCATGTGCTCCCCTT
TCGTCTAGATGGCGTCCATGGGATCCAGGTGGCTGCACACGTGCAAGTCCAATGCGTGGAGGGT
GTCCGCCTTATCTTATGGGGTAAAAAAATCAGTTTCGAAATAATAAGATAAGCCGAGATGTAAA
AGGCTTGTCTTCTAGGTGTCTGGTTTTGGGTCAAGTAGACTCGGTCTTTGAGCACCCGTCATGC
TGCAGCTCGAGGACGAGCTGCTTGTCCAGGAGGGGTGTAGTGTCAGGGCCTAAGGAGGCCCATG
GAGGGGCTGCGGTAGCAGCAGCGATGGGTCCTCTAAGGAGGATTAGATAAGGGTAGTTAGAGAT
AAGATTAGTTGAGATTATCTAGGAGATTAGTTGAGATTATCTAGGAAGGTTATCAGTTAGTAGT
TGTTGAGAGTTTTTAGGAGAGTTTTAAGGAGATAAGGATCTCTAGCTAGATAGGGACGGTCAGC
TGGCCTATTTATGTAATCAATGAATGAGAAAATAAAGTAGGCAAGAATTAGAAGGGACAAACCC
TCCTCTTGCTCGGCCGTGGGCAGAGGCCCCCGGCCGACGTTCCTGCCCATCGATACCCCTCTCC
AATCCCTCACCGATCTAGCGACCATAACAAGTACCCTGATCATAATCTGCTCTATCAATGAGGT
ACAAATTACTTGATGTGATTCCCTACGGACTACGACAATACCATGTTTTACCTACATGAAGATT
GTGAGGTACTAACTGCTCTTTCCATATTTTTTTCCGGTGGTGGTGATGTTGGTGATTCAGATTT
TTCATTGGCTTGTAGGTATAGTGATGTTGATAGACATGTAGCCCTTTTTTCTCACTATAGTGAG
GCTACTCAAAATAGTACGATACACAAACATCAGTCTAGATTTTCAACACATCAGATATTTTATT
TGTCAGAAAGTTTCAGAGGGTTAGATATCAGGTGCTTGTTATGATTTCTGCTGTGTTTCTTTTA
GGTATTCACTTTTCTATTTGAAAAACATCACTAATGGAGTTTATGTTTCTTAGTTTGAAGTGGT
AGATGATGCAAGGCTTTCAGCCAAAACCGTAGCTGTTCTCCAAAATCTTTGCCAAAAGGTTAGT
ATCATTCTGCCTTTCATGCTACCTGTTTATAGCATGGTCTGTTGTCTGTACATCCATTATTTTT
TTGACACTGTGCTATGCACATGTAACCGTGTAGGGGCTCTTCTATTGAACCATTAGTTTCTCTG
TTGCTGCACCTCACTCTCCTCAAATTTGAGCTGTGTGGAACACTGAAATTGACCCCTGGACCCT
GGTTAATTGACTTATTTGACTATTTCTGTGTTAAATATACAGGAGAAATATTCAGCAAAAATCA
CACTATTAAGTACAATGTGTTTGTGTAGTCTAAGTTTGGACAAAGCCATATAGGCTGCTGACGG
TGCTACTGTTAAGTACGAACTGCTAAGACCATGCCAACATTATGTATAATGTGTCAATGTGTTT
CTGTAGTCTAAGTTTGGACAAGGCCGCATAGGCTGATGACAACGGAACTATTACTGTTGTGCCT
GTTACTGACTCAATCCTGTGTGCCGTTCACTCAATGCATGCCTTAGTCCTCTGCCATTTTGCGC
TATTGCAGGATGCCTGAATCCTCTATCGTTTTGCTTCATAAACATTATTTGACAGCGGATCGGA
TGCCAGATGCATTTCGAGCTTGGTTAATGGATAATGCTTGTTCATTGAGTTTACGTTTTCACAT
CTGAGATTCGACTATGCGTATAAAGGGCTCATGTTCTGAGTAACACTTGCTACTTTCTTGCTCT
TAGTTAGTAAAATAGTAAGTGATGTTCAAGTATGTTTCTCTGATGCCCTAGGTGTGTGGTGGTC
TGGTGGATTAAATGTGAATGTTGAGCTGCAACTTTCACCAATTGGTTTGGAGAAAGTCAATAGA
GGCTTGGGTTCTTTTAGTTAAGAAAAATTGTGCTGGTGTTCAGTTCTAACATGAAATTGTTTAT
TGTTCTCTGTAATCTCACATTTCTTTTTTTTTTATATCTGAACAGGGATTATGTGCCAGTTTCA
GTTTTTGGTAACAGTCTACAGGACTTTTAGACATTCAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.094584571
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020;Zhang et al., 2019