Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d024423_circ_g.1 |
ID in PlantcircBase | zma_circ_010221 |
Alias | zma_circ_0000168 |
Organism | Zea mays |
Position | chr10: 70400895-70406264 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d024423 |
Parent gene annotation |
DNA polymerase like1 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d024423_T006:8 Zm00001d024423_T001:7 Zm00001d024423_T003:7 Zm00001d024423_T010:4 Zm00001d024423_T008:7 Zm00001d024423_T002:7 Zm00001d024423_T005:7 Zm00001d024423_T009:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.122171665 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
70400921-70400999(+) 70400912-70406151(-) |
Potential amino acid sequence |
MAVRGSSAFKLRFYPNLEVQNIAQEWVKESRRLFYLRTANNVTNNIYKGNTPLWTGMVQNELSE DCRGLNYTYLNNLRERVSSKSIVNRHGNNRELIGHSTINQHVKSVPAPVRVVNDSVKCFSMPRA SKVEIPWPAYSPAEDPLLDKSNTEVILELEDKVHDGDDKKKKTVVKKVVSPFPTKAAFSEESLK AREALASIYDKVLVVDDIESARNIVKLLTTKYKSFIHACDTEVANINAKEETPVGHGEVICFSI YSANSDVQAADFGNGKTCIWVDVLDGGRGVLMEFAPFFEDSSIKKVWHNYSFDSHVIENYGIKI AGFHADTMHLARLWDSSRKIDGGYSLEGLTNDRRVMDTVPEDLPKPGKTSMKTIFGRKNIRKDG SEGKVVSVEPVKKLQREDRELWICYSSLDSMSTLRLYDSLKSKLTTRRWILDGCPRGTMYDFYE QYWRPFGALLVKMETEGMLVDRGYLSEIEKAAIAERKLAADKFRKWASKYCPDAKYMNVNSDIQ IRQLLFGGIENRHKSGETWPHSKTFKVLNEESVATEGKKTSKYRTIKLCSIVEDLKIDMFTPSG WPTVSGDALRSLAGKIPTEYIYTIDDIQDDDEYTSGSENPDGNSSYGTAYEAFGGGKNGKEACH AIAALCEICSIDSLISNFILPLQGDHISCAEGRIHCSLNINTETGRLSARTPNLQNQPALEKDR YRIRQAFVAAPGNSLIVADYGQAGGDFHSRTAMNMYQHIRDAVQEKKVLLEWHPQPGQEKPPVP LLKAGLFPLLRYGCSRKQCFQATFLSQLRSTKYCTRMG*(+) MGIVLPSIAALEVSLDQVEGATQEELSFLGQHHGYADTYSWLS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |