Detail information of BGIOSGA017042_circ_g.1


General Information
CircRNA Name BGIOSGA017042_circ_g.1
ID in PlantcircBase osi_circ_014732
Alias Chr04:30899215_30899431(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 29027725-29027941  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA017042
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA017042_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA017042-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGGACCGTCAAGGAGATCCTTGGGACCTGCGTCAGCGTTGGGTGCACCGTCGACGGCAAGGAC
CCCAAGGATCTGCAGCAGGAGATCTCCGATGGCGAGgcccgagcgggacaggaagaaggtcaag
aacatcaagcacagtggtaacatcagcctcgacgacgtcatcgagatcgccaggatcatgagga
acaggtcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCCGAGCGGGACAGGAAGAAGGTCAAGAACATCAAGCACAGTGGTAACATCAGCCTCGACGAC
GTCATCGAGATCGCCAGGATCATGAGGAACAGGTCCATGGCCAAGGAGATGGCCGGGACCGTCA
AGGAGATCCTTGGGACCTGCGTCAGCGTTGGGTGCACCGTCGACGGCAAGGACCCCAAGGATCT
GCAGCAGGAGATCTCCGATGGCGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021