Plant Circular RNA Database

Detail information of AT4G28600_circ_g.4

			
						 General Information
					
						CircRNA Name
						AT4G28600_circ_g.4
					
						ID in PlantcircBase
						ath_circ_033354
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 14130385-14131936  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						MapSplice
					
						Parent gene
						
							AT4G28600						
					
						Parent gene annotation
						
							no pollen germination related 2
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT4G28600_circ_g.1 AT4G28600_circ_g.2 AT4G28600_circ_g.3 AT4G28600_circ_g.5 AT4G28600_circ_g.6 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT4G28600.1:2
AT4G28600.2:2
AT4G28600.3:2

General Information
CircRNA Name	AT4G28600_circ_g.4
ID in PlantcircBase	ath_circ_033354
Alias	NA
Organism	Arabidpsis thaliana
Position	chr4: 14130385-14131936 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	MapSplice
Parent gene	AT4G28600
Parent gene annotation	no pollen germination related 2
Parent gene strand	+
Alternative splicing	AT4G28600_circ_g.1 AT4G28600_circ_g.2 AT4G28600_circ_g.3 AT4G28600_circ_g.5 AT4G28600_circ_g.6
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT4G28600.1:2 AT4G28600.2:2 AT4G28600.3:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAAAGGAGAAGTGAAAGATGCGATTAAGACTTACACACAACTTCTAGCACTCCTTCAGGTTCAA
AGCAAAAGCTTCAATTCTGCAAAGAAGCTGCCTAAGgaggcgagagcgcttttgggaagaattg
agtatcagaaaggaaatatagaggcggcattgcgagtctttgaagggatagatatcaatggtat
cacagtaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1473
Transcript exons: 14130385-14130652,14130732-14131936
GAGGCGAGAGCGCTTTTGGGAAGAATTGAGTATCAGAAAGGAAATATAGAGGCGGCATTGCGAG
TCTTTGAAGGGATAGATATCAATGGTATCACAGTAAAGATGAAAACCGCTCTAACCGTTAGAGA
AGACCGGAAACATAGAAGACGGTCTAAAGGCGGCTTTTCTACTGCTCCTTCACCTGCCATGTCT
AAACATGCTGTTAGTTTACTTTTCGAAGCTATTTTTCTCAAAGCCAAGTCTCTCCAGCGTCTTG
GAAGGTTCCAAGAAGCTGCGGAGTCTTGCAGAGTTATTCTTGATATAGTCGAGACTTCTTTAGC
AGAAGGTGCGTCGGATAATGTGACTGGAGATATTAAGTTGCAGGAGACACTGACAAAAGCGGTT
GAGCTGCTTCCTGAGTTGTGGAAGCTTGCTGATTCACCTCGTGATGCTATTTTGTCGTATAGAA
GAGCGCTTCTCAATCACTGGAAACTCGATCCAGAAACCACGGCGAGGATACAGAAAGAGTACGC
AGTGTTTCTCCTCTATTCCGGGGAAGAAGCAGTGCCGCCAAACCTACGTTCTCAGACTGAGGGC
TCATTCATTCCGAGGAACAATGTGGAAGAAGCTATTCTTCTTCTGATGTTACTTCTCAGGAAAG
TTAATCTGAAAAGAATCTCATGGGATGCGGCAATCTTGGACCATCTCTCGTTCGCTCTTACAAT
CGCAGGCGATCTAACCGCTCTGGCTAAGCAGTTTGAAGAGCTTAGTCCTGAGCTCTTGGATCAG
AGGGAACTTTATCATACATTGTCTTTGTGTTACCAAGGTGCAGGAGAAGGTCTTGTTGCGTTAG
GTTTACTGAGGAAGCTATTTTCAGAACGAGAGGATCCAAACAGGACTTCGGGTTTGCTGATGGC
TTCCAAAATATGCGGTGAGAGGTCTGGTCTTGCTGAGGAAGGGTTAGATTATGCCCGGAAAGCT
ATCGGAAACTTGGGGAAGGAATGCAGTCAATTAGATGGAGCAGCGCGTTTCGTTTTAGGGATCA
CGCTCACGGAAAGCTCTAGAATGGCTGTTACAGAGACTGAGAGGATAGCTAGGCAATCCGAGGG
GATTCAGGCCCTGGAATCTGCAGATATGACAAACCCGAGGGTTGTGCACCGTCTTGCGTTGGAG
AATGCAGAACAGAGGAAACTGGATTCTGCATTAGCATATGCTAAAGAGGCGTTGAAACTTGGAG
CAGAGTCTGATCTTGAAGTATGGTTACTTTTGGCTCGGGTTTTATCTGCACAGAAGCGGTTTTC
AGACGCGGAGACCATTGTGGATGCAGCGCTTAACGAGACAGGGAAATGGGAACAGGGGAAGCTG
TTACGTTTGAAGGCAAAGCTTCGTTTAGCTAAAGGAGAAGTGAAAGATGCGATTAAGACTTACA
CACAACTTCTAGCACTCCTTCAGGTTCAAAGCAAAAGCTTCAATTCTGCAAAGAAGCTGCCTAA
G
Transcript length: 242
Transcript exons: 14130385-14130441,14131752-14131936
GAGGCGAGAGCGCTTTTGGGAAGAATTGAGTATCAGAAAGGAAATATAGAGGCGGCAAGACCAT
TGTGGATGCAGCGCTTAACGAGACAGGGAAATGGGAACAGGGGAAGCTGTTACGTTTGAAGGCA
AAGCTTCGTTTAGCTAAAGGAGAAGTGAAAGATGCGATTAAGACTTACACACAACTTCTAGCAC
TCCTTCAGGTTCAAAGCAAAAGCTTCAATTCTGCAAAGAAGCTGCCTAAG
						
					

						Genomic sequence
						
							GAGGCGAGAGCGCTTTTGGGAAGAATTGAGTATCAGAAAGGAAATATAGAGGCGGCATTGCGAG
TCTTTGAAGGGATAGATATCAATGGTATCACAGTAAAGATGAAAACCGCTCTAACCGTTAGAGA
AGACCGGAAACATAGAAGACGGTCTAAAGGCGGCTTTTCTACTGCTCCTTCACCTGCCATGTCT
AAACATGCTGTTAGTTTACTTTTCGAAGCTATTTTTCTCAAAGCCAAGTCTCTCCAGCGTCTTG
GAAGGTTCCAAGGTAGTAACAGTCATTTCTCTTAATCCGTGTTTGGTTTTGTTTTTGGCTAAAC
AGAAATATCATGTGCTTCTTCTTGCAGAAGCTGCGGAGTCTTGCAGAGTTATTCTTGATATAGT
CGAGACTTCTTTAGCAGAAGGTGCGTCGGATAATGTGACTGGAGATATTAAGTTGCAGGAGACA
CTGACAAAAGCGGTTGAGCTGCTTCCTGAGTTGTGGAAGCTTGCTGATTCACCTCGTGATGCTA
TTTTGTCGTATAGAAGAGCGCTTCTCAATCACTGGAAACTCGATCCAGAAACCACGGCGAGGAT
ACAGAAAGAGTACGCAGTGTTTCTCCTCTATTCCGGGGAAGAAGCAGTGCCGCCAAACCTACGT
TCTCAGACTGAGGGCTCATTCATTCCGAGGAACAATGTGGAAGAAGCTATTCTTCTTCTGATGT
TACTTCTCAGGAAAGTTAATCTGAAAAGAATCTCATGGGATGCGGCAATCTTGGACCATCTCTC
GTTCGCTCTTACAATCGCAGGCGATCTAACCGCTCTGGCTAAGCAGTTTGAAGAGCTTAGTCCT
GAGCTCTTGGATCAGAGGGAACTTTATCATACATTGTCTTTGTGTTACCAAGGTGCAGGAGAAG
GTCTTGTTGCGTTAGGTTTACTGAGGAAGCTATTTTCAGAACGAGAGGATCCAAACAGGACTTC
GGGTTTGCTGATGGCTTCCAAAATATGCGGTGAGAGGTCTGGTCTTGCTGAGGAAGGGTTAGAT
TATGCCCGGAAAGCTATCGGAAACTTGGGGAAGGAATGCAGTCAATTAGATGGAGCAGCGCGTT
TCGTTTTAGGGATCACGCTCACGGAAAGCTCTAGAATGGCTGTTACAGAGACTGAGAGGATAGC
TAGGCAATCCGAGGGGATTCAGGCCCTGGAATCTGCAGATATGACAAACCCGAGGGTTGTGCAC
CGTCTTGCGTTGGAGAATGCAGAACAGAGGAAACTGGATTCTGCATTAGCATATGCTAAAGAGG
CGTTGAAACTTGGAGCAGAGTCTGATCTTGAAGTATGGTTACTTTTGGCTCGGGTTTTATCTGC
ACAGAAGCGGTTTTCAGACGCGGAGACCATTGTGGATGCAGCGCTTAACGAGACAGGGAAATGG
GAACAGGGGAAGCTGTTACGTTTGAAGGCAAAGCTTCGTTTAGCTAAAGGAGAAGTGAAAGATG
CGATTAAGACTTACACACAACTTCTAGCACTCCTTCAGGTTCAAAGCAAAAGCTTCAATTCTGC
AAAGAAGCTGCCTAAG
						
					

			
		

Sequences
Splice junction sequence	TAAAGGAGAAGTGAAAGATGCGATTAAGACTTACACACAACTTCTAGCACTCCTTCAGGTTCAA AGCAAAAGCTTCAATTCTGCAAAGAAGCTGCCTAAGgaggcgagagcgcttttgggaagaattg agtatcagaaaggaaatatagaggcggcattgcgagtctttgaagggatagatatcaatggtat cacagtaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1473 Transcript exons: 14130385-14130652,14130732-14131936 GAGGCGAGAGCGCTTTTGGGAAGAATTGAGTATCAGAAAGGAAATATAGAGGCGGCATTGCGAG TCTTTGAAGGGATAGATATCAATGGTATCACAGTAAAGATGAAAACCGCTCTAACCGTTAGAGA AGACCGGAAACATAGAAGACGGTCTAAAGGCGGCTTTTCTACTGCTCCTTCACCTGCCATGTCT AAACATGCTGTTAGTTTACTTTTCGAAGCTATTTTTCTCAAAGCCAAGTCTCTCCAGCGTCTTG GAAGGTTCCAAGAAGCTGCGGAGTCTTGCAGAGTTATTCTTGATATAGTCGAGACTTCTTTAGC AGAAGGTGCGTCGGATAATGTGACTGGAGATATTAAGTTGCAGGAGACACTGACAAAAGCGGTT GAGCTGCTTCCTGAGTTGTGGAAGCTTGCTGATTCACCTCGTGATGCTATTTTGTCGTATAGAA GAGCGCTTCTCAATCACTGGAAACTCGATCCAGAAACCACGGCGAGGATACAGAAAGAGTACGC AGTGTTTCTCCTCTATTCCGGGGAAGAAGCAGTGCCGCCAAACCTACGTTCTCAGACTGAGGGC TCATTCATTCCGAGGAACAATGTGGAAGAAGCTATTCTTCTTCTGATGTTACTTCTCAGGAAAG TTAATCTGAAAAGAATCTCATGGGATGCGGCAATCTTGGACCATCTCTCGTTCGCTCTTACAAT CGCAGGCGATCTAACCGCTCTGGCTAAGCAGTTTGAAGAGCTTAGTCCTGAGCTCTTGGATCAG AGGGAACTTTATCATACATTGTCTTTGTGTTACCAAGGTGCAGGAGAAGGTCTTGTTGCGTTAG GTTTACTGAGGAAGCTATTTTCAGAACGAGAGGATCCAAACAGGACTTCGGGTTTGCTGATGGC TTCCAAAATATGCGGTGAGAGGTCTGGTCTTGCTGAGGAAGGGTTAGATTATGCCCGGAAAGCT ATCGGAAACTTGGGGAAGGAATGCAGTCAATTAGATGGAGCAGCGCGTTTCGTTTTAGGGATCA CGCTCACGGAAAGCTCTAGAATGGCTGTTACAGAGACTGAGAGGATAGCTAGGCAATCCGAGGG GATTCAGGCCCTGGAATCTGCAGATATGACAAACCCGAGGGTTGTGCACCGTCTTGCGTTGGAG AATGCAGAACAGAGGAAACTGGATTCTGCATTAGCATATGCTAAAGAGGCGTTGAAACTTGGAG CAGAGTCTGATCTTGAAGTATGGTTACTTTTGGCTCGGGTTTTATCTGCACAGAAGCGGTTTTC AGACGCGGAGACCATTGTGGATGCAGCGCTTAACGAGACAGGGAAATGGGAACAGGGGAAGCTG TTACGTTTGAAGGCAAAGCTTCGTTTAGCTAAAGGAGAAGTGAAAGATGCGATTAAGACTTACA CACAACTTCTAGCACTCCTTCAGGTTCAAAGCAAAAGCTTCAATTCTGCAAAGAAGCTGCCTAA G Transcript length: 242 Transcript exons: 14130385-14130441,14131752-14131936 GAGGCGAGAGCGCTTTTGGGAAGAATTGAGTATCAGAAAGGAAATATAGAGGCGGCAAGACCAT TGTGGATGCAGCGCTTAACGAGACAGGGAAATGGGAACAGGGGAAGCTGTTACGTTTGAAGGCA AAGCTTCGTTTAGCTAAAGGAGAAGTGAAAGATGCGATTAAGACTTACACACAACTTCTAGCAC TCCTTCAGGTTCAAAGCAAAAGCTTCAATTCTGCAAAGAAGCTGCCTAAG
Genomic sequence	GAGGCGAGAGCGCTTTTGGGAAGAATTGAGTATCAGAAAGGAAATATAGAGGCGGCATTGCGAG TCTTTGAAGGGATAGATATCAATGGTATCACAGTAAAGATGAAAACCGCTCTAACCGTTAGAGA AGACCGGAAACATAGAAGACGGTCTAAAGGCGGCTTTTCTACTGCTCCTTCACCTGCCATGTCT AAACATGCTGTTAGTTTACTTTTCGAAGCTATTTTTCTCAAAGCCAAGTCTCTCCAGCGTCTTG GAAGGTTCCAAGGTAGTAACAGTCATTTCTCTTAATCCGTGTTTGGTTTTGTTTTTGGCTAAAC AGAAATATCATGTGCTTCTTCTTGCAGAAGCTGCGGAGTCTTGCAGAGTTATTCTTGATATAGT CGAGACTTCTTTAGCAGAAGGTGCGTCGGATAATGTGACTGGAGATATTAAGTTGCAGGAGACA CTGACAAAAGCGGTTGAGCTGCTTCCTGAGTTGTGGAAGCTTGCTGATTCACCTCGTGATGCTA TTTTGTCGTATAGAAGAGCGCTTCTCAATCACTGGAAACTCGATCCAGAAACCACGGCGAGGAT ACAGAAAGAGTACGCAGTGTTTCTCCTCTATTCCGGGGAAGAAGCAGTGCCGCCAAACCTACGT TCTCAGACTGAGGGCTCATTCATTCCGAGGAACAATGTGGAAGAAGCTATTCTTCTTCTGATGT TACTTCTCAGGAAAGTTAATCTGAAAAGAATCTCATGGGATGCGGCAATCTTGGACCATCTCTC GTTCGCTCTTACAATCGCAGGCGATCTAACCGCTCTGGCTAAGCAGTTTGAAGAGCTTAGTCCT GAGCTCTTGGATCAGAGGGAACTTTATCATACATTGTCTTTGTGTTACCAAGGTGCAGGAGAAG GTCTTGTTGCGTTAGGTTTACTGAGGAAGCTATTTTCAGAACGAGAGGATCCAAACAGGACTTC GGGTTTGCTGATGGCTTCCAAAATATGCGGTGAGAGGTCTGGTCTTGCTGAGGAAGGGTTAGAT TATGCCCGGAAAGCTATCGGAAACTTGGGGAAGGAATGCAGTCAATTAGATGGAGCAGCGCGTT TCGTTTTAGGGATCACGCTCACGGAAAGCTCTAGAATGGCTGTTACAGAGACTGAGAGGATAGC TAGGCAATCCGAGGGGATTCAGGCCCTGGAATCTGCAGATATGACAAACCCGAGGGTTGTGCAC CGTCTTGCGTTGGAGAATGCAGAACAGAGGAAACTGGATTCTGCATTAGCATATGCTAAAGAGG CGTTGAAACTTGGAGCAGAGTCTGATCTTGAAGTATGGTTACTTTTGGCTCGGGTTTTATCTGC ACAGAAGCGGTTTTCAGACGCGGAGACCATTGTGGATGCAGCGCTTAACGAGACAGGGAAATGG GAACAGGGGAAGCTGTTACGTTTGAAGGCAAAGCTTCGTTTAGCTAAAGGAGAAGTGAAAGATG CGATTAAGACTTACACACAACTTCTAGCACTCCTTCAGGTTCAAAGCAAAAGCTTCAATTCTGC AAAGAAGCTGCCTAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.222014398

Conservation Information
Conserved circRNAs	NA
PMCS	0.222014398

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							14130487-14131933(+)
						
					

						Potential amino acid sequence
						
							MKTALTVREDRKHRRRSKGGFSTAPSPAMSKHAVSLLFEAIFLKAKSLQRLGRFQEAAESCRVI
LDIVETSLAEGASDNVTGDIKLQETLTKAVELLPELWKLADSPRDAILSYRRALLNHWKLDPET
TARIQKEYAVFLLYSGEEAVPPNLRSQTEGSFIPRNNVEEAILLLMLLLRKVNLKRISWDAAIL
DHLSFALTIAGDLTALAKQFEELSPELLDQRELYHTLSLCYQGAGEGLVALGLLRKLFSEREDP
NRTSGLLMASKICGERSGLAEEGLDYARKAIGNLGKECSQLDGAARFVLGITLTESSRMAVTET
ERIARQSEGIQALESADMTNPRVVHRLALENAEQRKLDSALAYAKEALKLGAESDLEVWLLLAR
VLSAQKRFSDAETIVDAALNETGKWEQGKLLRLKAKLRLAKGEVKDAIKTYTQLLALLQVQSKS
FNSAKKLPKEARALLGRIEYQKGNIEAALRVFEGIDINGITVKMKTALTVREDRKHRRRSKGGF
STAPSPAMSKHAVSLLFEAIFLKAKSLQRLGRFQEAAESCRVILDIVETSLAEGASDNVTGDIK
LQETLTKAVELLPELWKLADSPRDAILSYRRALLNHWKLDPETTARIQKEYAVFLLYSGEEAVP
PNLRSQTEGSFIPRNNVEEAILLLMLLLRKVNLKRISWDAAILDHLSFALTIAGDLTALAKQFE
ELSPELLDQRELYHTLSLCYQGAGEGLVALGLLRKLFSEREDPNRTSGLLMASKICGERSGLAE
EGLDYARKAIGNLGKECSQLDGAARFVLGITLTESSRMAVTETERIARQSEGIQALESADMTNP
RVVHRLALENAEQRKLDSALAYAKEALKLGAESDLEVWLLLARVLSAQKRFSDAETIVDAALNE
TGKWEQGKLLRLKAKLRLAKGEVKDAIKTYTQLLALLQVQSKSFNSAKKLPKEARALLGRIEYQ
KGNIEAALRVFEGIDINGITVKMKTALTVREDRKHRRRSKGGFSTAPSPAMSKHAVSLLFEAIF
LKAKSLQRLGRFQEAAESCRVILDIVETSLAEGASDNVTGDIKLQETLTKAVELLPELWKLADS
PRDAILSYRRALLNHWKLDPETTARIQKEYAVFLLYSGEEAVPPNLRSQTEGSFIPRNNVEEAI
LLLMLLLRKVNLKRISWDAAILDHLSFALTIAGDLTALAKQFEELSPELLDQRELYHTLSLCYQ
GAGEGLVALGLLRKLFSEREDPNRTSGLLMASKICGERSGLAEEGLDYARKAIGNLGKECSQLD
GAARFVLGITLTESSRMAVTETERIARQSEGIQALESADMTNPRVVHRLALENAEQRKLDSALA
YAKEALKLGAESDLEVWLLLARVLSAQKRFSDAETIVDAALNETGKWEQGKLLRLKAKLRLAKG
EVKDAIKTYTQLLALLQVQSKSFNSAKKLPKEARALLGRIEYQKGNIEAALRVFEGIDINGITV
KMKTALTVREDRKHRRRSKGGFSTAPSPAMSKHAVSLLFEAIFLKAKSLQRLGRFQEAAESCRV
ILDIVETSLAEGASDNVTGDIKLQETLTKAVELLPELWKLADSPRDAILSYRRALLNHWKLDPE
TTARIQKEYAVFLLYSGEEAVPPNLRSQTEGSFIPRNNVEEAILLLMLLLRKVNLKRISWDAAI
LDHLSFALTIAGDLTALAKQFEELSPELLDQRELYHTLSLCYQGAGEGLVALGLLRKLFSERED
PNRTSGLLMASKICGERSGLAEEGLDYARKAIGNLGKECSQLDGAARFVLGITLTESSRMAVTE
TERIARQSEGIQALESADMTNPRVVHRLALENAEQRKLDSALAYAKEALKLGAESDLEVWLLLA
RVLSAQKRFSDAETIVDAALNETGKWEQGKLLRLKAKLRLAKGEVKDAIKTYTQLLALLQVQSK
SFNSAKKLPK(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	14130487-14131933(+)
Potential amino acid sequence	MKTALTVREDRKHRRRSKGGFSTAPSPAMSKHAVSLLFEAIFLKAKSLQRLGRFQEAAESCRVI LDIVETSLAEGASDNVTGDIKLQETLTKAVELLPELWKLADSPRDAILSYRRALLNHWKLDPET TARIQKEYAVFLLYSGEEAVPPNLRSQTEGSFIPRNNVEEAILLLMLLLRKVNLKRISWDAAIL DHLSFALTIAGDLTALAKQFEELSPELLDQRELYHTLSLCYQGAGEGLVALGLLRKLFSEREDP NRTSGLLMASKICGERSGLAEEGLDYARKAIGNLGKECSQLDGAARFVLGITLTESSRMAVTET ERIARQSEGIQALESADMTNPRVVHRLALENAEQRKLDSALAYAKEALKLGAESDLEVWLLLAR VLSAQKRFSDAETIVDAALNETGKWEQGKLLRLKAKLRLAKGEVKDAIKTYTQLLALLQVQSKS FNSAKKLPKEARALLGRIEYQKGNIEAALRVFEGIDINGITVKMKTALTVREDRKHRRRSKGGF STAPSPAMSKHAVSLLFEAIFLKAKSLQRLGRFQEAAESCRVILDIVETSLAEGASDNVTGDIK LQETLTKAVELLPELWKLADSPRDAILSYRRALLNHWKLDPETTARIQKEYAVFLLYSGEEAVP PNLRSQTEGSFIPRNNVEEAILLLMLLLRKVNLKRISWDAAILDHLSFALTIAGDLTALAKQFE ELSPELLDQRELYHTLSLCYQGAGEGLVALGLLRKLFSEREDPNRTSGLLMASKICGERSGLAE EGLDYARKAIGNLGKECSQLDGAARFVLGITLTESSRMAVTETERIARQSEGIQALESADMTNP RVVHRLALENAEQRKLDSALAYAKEALKLGAESDLEVWLLLARVLSAQKRFSDAETIVDAALNE TGKWEQGKLLRLKAKLRLAKGEVKDAIKTYTQLLALLQVQSKSFNSAKKLPKEARALLGRIEYQ KGNIEAALRVFEGIDINGITVKMKTALTVREDRKHRRRSKGGFSTAPSPAMSKHAVSLLFEAIF LKAKSLQRLGRFQEAAESCRVILDIVETSLAEGASDNVTGDIKLQETLTKAVELLPELWKLADS PRDAILSYRRALLNHWKLDPETTARIQKEYAVFLLYSGEEAVPPNLRSQTEGSFIPRNNVEEAI LLLMLLLRKVNLKRISWDAAILDHLSFALTIAGDLTALAKQFEELSPELLDQRELYHTLSLCYQ GAGEGLVALGLLRKLFSEREDPNRTSGLLMASKICGERSGLAEEGLDYARKAIGNLGKECSQLD GAARFVLGITLTESSRMAVTETERIARQSEGIQALESADMTNPRVVHRLALENAEQRKLDSALA YAKEALKLGAESDLEVWLLLARVLSAQKRFSDAETIVDAALNETGKWEQGKLLRLKAKLRLAKG EVKDAIKTYTQLLALLQVQSKSFNSAKKLPKEARALLGRIEYQKGNIEAALRVFEGIDINGITV KMKTALTVREDRKHRRRSKGGFSTAPSPAMSKHAVSLLFEAIFLKAKSLQRLGRFQEAAESCRV ILDIVETSLAEGASDNVTGDIKLQETLTKAVELLPELWKLADSPRDAILSYRRALLNHWKLDPE TTARIQKEYAVFLLYSGEEAVPPNLRSQTEGSFIPRNNVEEAILLLMLLLRKVNLKRISWDAAI LDHLSFALTIAGDLTALAKQFEELSPELLDQRELYHTLSLCYQGAGEGLVALGLLRKLFSERED PNRTSGLLMASKICGERSGLAEEGLDYARKAIGNLGKECSQLDGAARFVLGITLTESSRMAVTE TERIARQSEGIQALESADMTNPRVVHRLALENAEQRKLDSALAYAKEALKLGAESDLEVWLLLA RVLSAQKRFSDAETIVDAALNETGKWEQGKLLRLKAKLRLAKGEVKDAIKTYTQLLALLQVQSK SFNSAKKLPK(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Liu et al., 2017

circRNA

Detail information of AT4G28600_circ_g.4

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