Detail information of BGIOSGA031778_circ_g.6


General Information
CircRNA Name BGIOSGA031778_circ_g.6
ID in PlantcircBase osi_circ_008462
Alias Chr10:18422422_18423185(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15307614-15308377  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA031778
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA031778-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATGGAACTATTGGACAAACCTTCCAGGGCATGTGAAACATCATTCTTTGAGGTGGTGACTGT
AGCAAATAAACGAAAATTCTCAGCAACTTCAACTGCcctcaaaataaattaatttgcaacaact
agatgacaatcctaggcccttgaagttgagatcaactccacgtattctcttgcaccatttgagc
aggtccct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCAAAATAAATTAATTTGCAACAACTAGATGACAATCCTAGGCCCTTGAAGTTGAGATCAAC
TCCACGTATTCTCTTGCACCATTTGAGCAGGTCCCTGGTAAATAAAAGTTGTGAAGGCCGTTCT
TATGAATGGACAAATAAAGAATATATTTCAAGGTATATGCACCTTAAGGAAAATCTTTGCACGA
GACATTCAGATGAACCTCCAGCTAAGTTGAGCCCACCAAACTGGTAAGATACCAGCAAATTGGC
CTTTTCAAAGGTATCTACAATACATATAACTGGTTATTATACAATCACAACATAGCAAATAAAG
CAATAGAAGAAGATTGCATCTACCAATGAGTTTAGCGGAGATAGACTCCAAGCTTGGATAGCAC
CCATGAATTATATCGATCATGTCTTTTCGGTTAGGTTCACCCACCATAACTTTTCTCCACAGAG
CACTAAAGGTTAGTCTTCCTGGTTGAAGAAAGGACAAAAATTGATTGCAAATTAGCACAGGGCA
TTAATTTGGTCCTTATTGTGAGCTTGTGGAAATGTAGAAATGTCATTATGGACTGAAACACTGA
AACATAATATGCATTAGTTATTCTGAAGCAAAAGGTGTAAATCAATAGTTCTATGCAATTTTCA
AGTGCATAACTGCAAGTCATAACTTTATGGAACTATTGGACAAACCTTCCAGGGCATGTGAAAC
ATCATTCTTTGAGGTGGTGACTGTAGCAAATAAACGAAAATTCTCAGCAACTTCAACTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021