Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d023543_circ_g.4 |
ID in PlantcircBase | zma_circ_010154 |
Alias | zma_circ_0000205, GRMZM2G443495_C1 |
Organism | Zea mays |
Position | chr10: 9586081-9586547 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d023543 |
Parent gene annotation |
Fatty acid amide hydrolase |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d023543_T002:2 Zm00001d023543_T003:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.187710358 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
9586120-9586092(+) 9586158-9586377(-) |
Potential amino acid sequence |
MTSSGSQLMKKAILLTPGPELSLTAARNLAATWTGVTSPDLYASEKSRTVQRLMPRASAASAAS SRAGRQPTASWTRSAADRSGLVSRTLCSGVSSQLCDAVNSGGSGMSASDTSSLVPEGGFLGLPH DVVGVAADEEGHIAHARARALPHRREEPRRHLDRRHLAGPVRVGEVADGPAPDAARVGGQRGLQ PRREAAHGLLDPLRRRQVGLGQPHALLRGVFPAVRCREQRRLRDVGVGHQLSGT*(+) MAFFISCDPDDVMRQAEESTLRYQRAGVRRRHPGAAAVHGIAQLGRHPGAERAADQARPVGGGA GPGGRGLPPGAAGGRAGRRRARHQALDRPRLLRRVQVRRGDACPGGGEVPRGGEGELGPWREQY GLLHQLRPRRRHEAGRGIHPQVPESWCPTPTSRSRRCSRHRTAGKTPRSRACG*(-) |
Sponge-miRNAs | zma-miR408b-5p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |