Detail information of Os03g0195900_circ_g.1


General Information
CircRNA Name Os03g0195900_circ_g.1
ID in PlantcircBase osa_circ_018358
Alias Os_ciR3375
Organism Oryza sativa
Position chr3: 4988191-4989530  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os03g0195800
Parent gene annotation Similar to Sulfate transporter (Fragment). (Os03t0195800-01)
Parent gene strand +
Alternative splicing NA
Support reads 3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0195900-02:3
Os03t0195900-01:3
Os03t0195900-02:3
Os03t0195900-01:3
Os03t0195800-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATGGAAACCAGTATTGGGTACAACTGATGCTAGCTTGGTTGCTGCTGCAGTGGAACTGGCAG
ACGATATTGATCGGAGCATCCTTCCTGGCATTCCTCctgcttcagtactgcgcttcatgtgcag
ataggttcgccttcagcaccttgccggtgaataacgccggcaatgccgcgagccgtgtccgacg
ggggcgag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1128
Transcript exons: 4988191-4988670,4988803-4989093,4989174-4989530
CTGCTTCAGTACTGCGCTTCATGTGCAGATAGGTTCGCCTTCAGCACCTTGCCGGTGAATAACG
CCGGCAATGCCGCGAGCCGTGTCCGACGGGGGCGAGGCCATCGACGCCGACATCGCCAGCCGGA
CGTCATCGCACAGCCACATGGACGGCGGCCATCATCATCATCATCACGGCCACAAGGTCGAGTT
CCCACCGAAGAAGAAGCTCATCGACGAGTTCACCGACGCCGTGAAGGAGACGTTCTTCGCCGAC
GACCCGTTGCGGCAGTACAAGGACCAGCCGATGTCAAAGAAGGTGTTGATCAGCCTGCAAAACT
TCTTCCCGGTGCTGGACTGGGGCCGGCACTACACCTTCCGCAAGTTCAGGGGCGACCTCGTCTC
CGGCCTCACCATTGCCAGCCTCTGCATACCCCAGGTTTGTGCCTGACGATCAAACACCATCTTG
CACGCACAGCAGCGACCTGAATAGCACAGCTCTAGTATTTGTATAGGGTGTGCTCGAGTGATAG
TCCAGCCAGTGGTCTAACGGAAATCTGCTGATTTTTCAGACAGCAGCTTCGTACCGCCTTTGAT
ATACGCGATGATGGGAAGTTCCAGGGATATAGCCATTGGTCCAGTGGCCGTCGTTTCGCTGCTG
CTTGGCACTCTCCTCCAGAATGAGTTTGATCCCAAGAAGAATCAGGAAGAGTACACCCGGCTGG
CCTTCACTGCAACGTTCTTCGCTGGGGTCACCCAGGCAGCGCTCGGATTCCTCAGGTGAGTGGC
TACCATAGAGTGAGATTGTACTCTGCTGCAGGCTAGGGTTTATCATAGAGTTCTTGTCCCATGC
TGCCATCGTTGGATTCATGGCGGGAGCGGCCATCACCATTGCCCTTCAGCAGCTTAAAGGCTTC
CTTGGAATTGCAAACTTCACCAAGAAGACTGACATCATCTCGGTCATGAAATCAGTCTGGGGAA
ATGTTCACCATGGGGTAGGACAAAATAATATCATTCCTTTAAGAACTTATTGCTTCTTCATCAT
TCTTTGATGGAAACCAGTATTGGGTACAACTGATGCTAGCTTGGTTGCTGCTGCAGTGGAACTG
GCAGACGATATTGATCGGAGCATCCTTCCTGGCATTCCTC

Transcript length: 197
Transcript exons: 4988191-4988223,4989367-4989530
CTGCTTCAGTACTGCGCTTCATGTGCAGATAGGTCACCATGGGGTAGGACAAAATAATATCATT
CCTTTAAGAACTTATTGCTTCTTCATCATTCTTTGATGGAAACCAGTATTGGGTACAACTGATG
CTAGCTTGGTTGCTGCTGCAGTGGAACTGGCAGACGATATTGATCGGAGCATCCTTCCTGGCAT
TCCTC

Genomic sequence CTGCTTCAGTACTGCGCTTCATGTGCAGATAGGTTCGCCTTCAGCACCTTGCCGGTGAATAACG
CCGGCAATGCCGCGAGCCGTGTCCGACGGGGGCGAGGCCATCGACGCCGACATCGCCAGCCGGA
CGTCATCGCACAGCCACATGGACGGCGGCCATCATCATCATCATCACGGCCACAAGGTCGAGTT
CCCACCGAAGAAGAAGCTCATCGACGAGTTCACCGACGCCGTGAAGGAGACGTTCTTCGCCGAC
GACCCGTTGCGGCAGTACAAGGACCAGCCGATGTCAAAGAAGGTGTTGATCAGCCTGCAAAACT
TCTTCCCGGTGCTGGACTGGGGCCGGCACTACACCTTCCGCAAGTTCAGGGGCGACCTCGTCTC
CGGCCTCACCATTGCCAGCCTCTGCATACCCCAGGTTTGTGCCTGACGATCAAACACCATCTTG
CACGCACAGCAGCGACCTGAATAGCACAGCTCCTGCATGAAAATTGCATACAATCTTCGTCATC
AACCCTGACATTGCAACACTTCATCCAGGACATCGGTTATGCGAAGCTTGCTGGCCTATTACCA
AATTATGGACTGTGTAAGTGCACAGAATTCACTTACTAGTATTTGTATAGGGTGTGCTCGAGTG
ATAGTCCAGCCAGTGGTCTAACGGAAATCTGCTGATTTTTCAGACAGCAGCTTCGTACCGCCTT
TGATATACGCGATGATGGGAAGTTCCAGGGATATAGCCATTGGTCCAGTGGCCGTCGTTTCGCT
GCTGCTTGGCACTCTCCTCCAGAATGAGTTTGATCCCAAGAAGAATCAGGAAGAGTACACCCGG
CTGGCCTTCACTGCAACGTTCTTCGCTGGGGTCACCCAGGCAGCGCTCGGATTCCTCAGGTGAG
TGGCTACCTGCAAAGTGATCATTGTTAAGCAGTCAGTTCTTAGATATGCAGTTCTGCCCTCTTG
GGTTCTTAGAGTGGACAGTTTACCATAGAGTGAGATTGTACTCTGCTGCAGGCTAGGGTTTATC
ATAGAGTTCTTGTCCCATGCTGCCATCGTTGGATTCATGGCGGGAGCGGCCATCACCATTGCCC
TTCAGCAGCTTAAAGGCTTCCTTGGAATTGCAAACTTCACCAAGAAGACTGACATCATCTCGGT
CATGAAATCAGTCTGGGGAAATGTTCACCATGGGGTAGGACAAAATAATATCATTCCTTTAAGA
ACTTATTGCTTCTTCATCATTCTTTGATGGAAACCAGTATTGGGTACAACTGATGCTAGCTTGG
TTGCTGCTGCAGTGGAACTGGCAGACGATATTGATCGGAGCATCCTTCCTGGCATTCCTC
Conservation Information
Conserved circRNAs osi_circ_004603*
PMCS 0.251117743
Functional Information
Coding potential Y
Potential coding position 4989460-4988655(+)
4988214-4989411(-)
Potential amino acid sequence MLAWLLLQWNWQTILIGASFLAFLLLQYCASCADRFAFSTLPVNNAGNAASRVRRGRGHRRRHR
QPDVIAQPHGRRPSSSSSRPQGRVPTEEEAHRRVHRRREGDVLRRRPVAAVQGPADVKEGVDQP
AKLLPGAGLGPALHLPQVQGRPRLRPHHCQPLHTPGLCLTIKHHLARTAAT*(+)
MKRSTEAGGMPGRMLRSISSASSTAAATKLASVVPNTGFHQRMMKKQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015