Detail information of Zm00001d038806_circ_g.7


General Information
CircRNA Name Zm00001d038806_circ_g.7
ID in PlantcircBase zma_circ_005331
Alias heat_test_circ_002717
Organism Zea mays
Position chr6: 164810563-164810810  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d038806
Parent gene annotation Chaperone protein ClpB1
Parent gene strand +
Alternative splicing Zm00001d038806_circ_g.8
Support reads NA
Tissues seedling
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered Zm00001d038806_T004:2
Zm00001d038806_T001:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCCGGACCTGTGACTGAAGCTACGTCGGCCATGAAGAGGGTGGGCAGCTGACTGAACAAGTG
AGGAGGAGGCCGTACAGCGTGATCCTGTTCGACGAGgaaccttcttgtccgcatcgacatgtcg
gagtacatggagcagcactcggttgctcgcctcatcggagcaccacctgggtaagtagcagaaa
atgcatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAACCTTCTTGTCCGCATCGACATGTCGGAGTACATGGAGCAGCACTCGGTTGCTCGCCTCATC
GGAGCACCACCTGGGTAAGTAGCAGAAAATGCATGCATCTTCGTATTTTTAACAGCGAATTGCG
ATGAACTCTTGTTCTGACATGAGCCGGACCTGTGACTGAAGCTACGTCGGCCATGAAGAGGGTG
GGCAGCTGACTGAACAAGTGAGGAGGAGGCCGTACAGCGTGATCCTGTTCGACGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.29461828
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018