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circRNA ID
AT1G01060_circ_g.6
Alias
ath_circ_000012
Organism
Arabidpsis thaliana
Position
chr1: 37373-37777  JBrowse»
Reference genome
TAIR10.38
Type  
u-circRNA
Identification method
PcircRNA_finder
Parent gene
Parent gene annotation
LHY1
Parent gene strand
-
Alternative splicing
Splice junction sequence  
AAAAAAAAATCTCTAAAAATAAATTTAAAAAACAGAGAGAAGAAGGAAGAAGATAACTGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAGAccaaacgaatccaccgcagccaaaacct
tcacaaatcttcatatcagtaatcaatcaccagattcgtatcatttatgctaacttttagagct
aataagat
Support reads
1
Tissues
leaf
Exon boundary  
Yes-No
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CCAAACGAATCCACCGCAGCCAAAACCTTCACAAATCTTCATATCAGTAATCAATCACCAGATT
CGTATCATTTATGCTAACTTTTAGAGCTAATAAGATTTAGTTAATCGCTTCTATAAGTTTCTCA
GCAGCCAAACAGAGATCTTAGTATGTTATAGGAATCCTAGAAACTGCTCATAATGTAAACTGTT
ATACCCTTGAGAGTAGCCATGGAGGAGACAAGTATGCAATCTGACTTATCATCTCACCGGGAAC
TCCCCGGAGAAGTCATCGTTCCCGGAAATAATCAAATCGGAAGCAAAACAAAAAAAAATCTCTA
AAAATAAATTTAAAAAACAGAGAGAAGAAGGAAGAAGATAACTGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGGAAGA
Number of exons covered
AT1G01060.7:2
AT1G01060.6:1
AT1G01060.3:2
AT1G01060.4:2
AT1G01060.5:1
AT1G01060.1:2
AT1G01060.2:1
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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