Detail information of BGIOSGA034093_circ_g.1


General Information
CircRNA Name BGIOSGA034093_circ_g.1
ID in PlantcircBase osi_circ_008969
Alias Chr11:12762467_12763883(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 10792872-10794288  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA034093
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034093_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TG-AC
Number of exons covered BGIOSGA034093-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACAGCAGCTCTCAACATATCACCTGTAGCTAAATGGCATAAGCAGTACTCATCCTTAATAAT
GGGCGATTGTGTTCCCTTTCCAGAGCCAGGTGGACCtggttcagtttgtttgtggaaggcttca
agtctagacttcaaaacctcagctgtgtcgtctttcctttgaattagtggttctccagtgacct
aggcgaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGTTCAGTTTGTTTGTGGAAGGCTTCAAGTCTAGACTTCAAAACCTCAGCTGTGTCGTCTTTC
CTTTGAATTAGTGGTTCTCCAGTGACCTAGGCGAATAAGACAAATGAAAGCATCAGTCAACATT
TTATAGCAGTTTTCTTAAATAGAAAAAGGGCAGTGAAAGAAACAGTACCGCAGAAGAAACGTTG
ATGCAATACAAAGAAAATAGTAAACTGGATGAATAAATTATTTATATACTATTAGTTCCTTTAT
TAACTGGAAAAATATTTGTTGCAAGGAAGCAAAATATCTACAACTATGCAGACTCAAAAGGGAT
ACAAGGTCCACACAAAATATGTCACTAAATGGATTAAGAAACAAAAAAAAAACTTGATAAAGGA
AATAATGAACTAACAGAAATCCTTATGCAACTTGTATCATTATCAATGCAGTTATAACAGATGT
TTGGCAAACTAATATGTGATAATGCAATATTGAATACTTTACAAAGTTGTTGATGTATAGAATT
ATATAATATAGTTATGTAGATTAGACATCATGACATAAATATCACATAGGTTAAACACCGTGAC
ATAATTTTATGAAGGCCGTCTAAAGAATTGTACAAGATATATAGGAAAAAATATCCAACAATTA
AATTGCTGAACCAAAAATCCACGCAAAATAAAATAAATTTGGAAAGTATAATAATTATTAAGTC
CATATTTCTGTATTCAACTTACATCATCAACTCCAGGAACCTTTGGAGGTGCAAACTTAGTGTG
ATAACTCCTGCCACTGGAGGGATGGATCCACCGGCCAGTAATTCTTTCTTCCAAAATTGAATCA
TCAATGGCAAAGTTAAGAACCTTATCGACCTTTGTACCTTTCTTTTCCAGCATTTCATCAAGCT
GAAGAAAAATATTATGAACCCGAAAGTAAACAGTGTAGTTCAAAACATAGCTACATTGCCTAAA
GAAAAATATTTTTATTGGCTGAACTATTAATAAAAGTACAAATCGAATACCTTCTGTGCCTGAA
CAACTGTCCGTGGGAACCCATCAAGAATGAAACCCTTTTGACATGAAGGTTTCTTCATGGCTTC
ATCAATAATTCCAACAACCAAGTCATCAGAAACAAGCTCTCCCTAACAAACATGAAGTTAGTGA
AAAATACTTATGGAACATGTTTTGCTTTGAGAAATCAGGAGTTCAGAGCTGGCTGGCTATTCAT
TTGGCCATCTAACTTTTATCTGCTGCTTATGTGGGTGATTTCCAAGTGCAATACCTTGTCCATT
GCTTCTTTCGCCTTGACTCCTAAAGGAGTCTTAGCAGCAACAGCAGCTCTCAACATATCACCTG
TAGCTAAATGGCATAAGCAGTACTCATCCTTAATAATGGGCGATTGTGTTCCCTTTCCAGAGCC
AGGTGGACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021