Plant Circular RNA Database

Detail information of Pbr026758.1_circ_g.1

			
						 General Information
					
						CircRNA Name
						Pbr026758.1_circ_g.1
					
						ID in PlantcircBase
						pbe_circ_000172
					
						Alias
						pear_circRNA_0001630
					
						Organism
						
							Pyrus betulifolia						
					
						Position
						
							chrscaffold432.0: 205114-208975  JBrowse»						
					
						Reference genome
						
							Pyrus_bretschneideri_scaffold						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ, CIRI
					
						Parent gene
						
							Pbr026758.1						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Pbr026758.1:5

General Information
CircRNA Name	Pbr026758.1_circ_g.1
ID in PlantcircBase	pbe_circ_000172
Alias	pear_circRNA_0001630
Organism	Pyrus betulifolia
Position	chrscaffold432.0: 205114-208975 JBrowse»
Reference genome	Pyrus_bretschneideri_scaffold
Type	e-circRNA
Identification method	find_circ, CIRI
Parent gene	Pbr026758.1
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Pbr026758.1:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATTCAGTTTTCAAGGGAGTGCTGGGCAGTCATTTGGGTGCTTCTTGACTCCTGGGATGAACATT
CGACTTGTTGGAGAGGCAAATGATTATGTCGGGAAGagagaagaactgcgtgctcgatttcctg
gagtccctggtgatcttgtcaatttttttctatatgttgctgaggaggtaaatttgtctcttta
aaatttta

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AGAGAAGAACTGCGTGCTCGATTTCCTGGAGTCCCTGGTGATCTTGTCAATTTTTTTCTATATG
TTGCTGAGGAGGTAAATTTGTCTCTTTAAAATTTTATAATTCATGTATTAACAGGTTTAGTGCT
TAAGTTTCTCGTCTGTAGTTTTATTCTTTTTTGTTAATTATTGTTTTCTCAGGTAAGAGGTATG
TTAGCACAGTTGGGATATGAGAAGTTAGACGATATAATTGGGCAGACAAATTTACTGAGGCCAC
GAGATATATCTCTAGTGAAAACTCAGCATCTTGATCTCAGTTATCTTCTCTCAGTATGTGGTTG
AATAATATATTATTTTCCTGTCCACGTGTCATATTCTTGGCATAATTTTTTTTTTTTTTCTTAT
GGTATTTTCTTTTTTATTCCAGAATGTCGGGTTACCAAAATGGAGCAGTACCACAATCAGGAAC
CAAGATGTTCACACTAATGGACCTGTTCTGGATGATGTTTTACTAGCAGATCAAGAGGTAACAC
TTTTTTTTTGAGGTGACAGTTGGACTGATGCTTGCTTGTTTAGCTAAATGAACATGGTATTTAC
TTTCTGATAACTCTCCTTAGTTTCTCTAAACCAACGGCTTTATGGGCATTCAGATAGGTGGGTG
GGAATTTAACATAGGTATTATCTGAATGTTTGAAGTACTAGATGTTCCATGTTAATGGTAAGTG
AAGGAAAAGGGAAGGTCTATTTGGACATATTTATGATCACAGGGCATCTGGTATTTCATTTACG
TCCAGTCCACTGCTTTTAGTTATGGTTATACCGTTAAATATAATGTTGAGGCTGGTGTTAATGT
TTTCTTTTTGTAGGTATACATTTTACTTGCATATAATCCATCCTTTATAACGACCAATTTTAGA
ATTTGAAGAGCCCTCATTTCACTTGAATAACATGTTCACTTCTTTGGTGTTAATTACACTTAAC
ACCCCTTGAGGTTAATCGAGTTTTCACAAAACCCCTCACGTTTGAGACATTACACTAACACCCC
TTTAGGTTTTAATTCTCTTTCATATAACCCCTTGAGTAAAAAATCTCCATATATTTACTAATTT
ACCCTTATAATTAAAAAAACCTAAAAATTTTATTGAATAAGAAAATATTTATAAACATGCAAAA
GACTGATATCAAAGTAAAATATAGGGAAAAAGAAATTAAGGGAAAAAAAATTTAATTATTACTT
TGAAAAACTATTTTATTTAATAAAAAAGAAGCTGTTCATTTCTTTTTCCCCTCCCACGTCCCAC
CTCCATTCCATCTCCTCCTCCTTTCTCCATCATCACCATCCATTCAAACTTTTGGCAACCACTT
GTCTCCTACCCTAGCCAACATTCTCATCTTCTTCCCATCGGAACCACCTCCATCACCCACCCAT
CACAGCCACCTAGCTACCTTTCACCCCCACAATCCGCAAATGTATACCTGATCCAGCAACACAA
GGGGCCAGTAGTGGTGGAGATGAAATCTGGAAGCCATGGCAGAAACCCAACCCGCTTCCTGAAA
ATTGCATTCCCAGCACCACCACCACCAAAACACAAGTCCCCAAGTCCCCAAAATCCCCACCATC
TTCCACTGCCACCGCCACCGCCATTTCCACCCAACCTGATTTTGGTACCAAATTATTATTTTGT
TACAGAGATTGATTTTTGGTTTGTTCAAAGTTTGAATTGGTGGTGGTGATGGAGGAAGAAGGAG
AAGATGGGGGTGGTTGCTCAGGTGGGAGGGGAAGAAGAAGATGAACAGTTTTTTTATTTTTTTG
AATAAAATATTTCTCCTACCCTCTGAGGAATCAATTCCTTTTGAAACTATATGCCATCTTTTTT
TTTTTTTTTTTTTTTTTTTTACCAAGCGTCTGCTTATACCTTTTTCTTTGTTCTTTCGCACCCT
GTTCAAATCATCATTCCATCATTTCCTGGTTCGTTGTTTGCAAAGTAATATTTAACTTTTTTTT
TTCTTGATTTTTTTTTTTGTCCACATGGTCATCTTCTTGTTAATTTTAAATGTTTAATGTTTTG
AATCTTTTTTTATATATAATTATAAAGTTTTTCTTTATTAGTTTTAAGTAGTCAATAAGGGCAT
ATTAGTAAATTTATAAACAAATTTTTGACTCATGGGGTTATATGAAATGAATTTAAAACCTGAT
GGGGTGTTAGTGTAATGTCTCAAACGTGGGGGTTTTGTGAAAACTCGATAAACCTCGGGATCTT
AGTGTAATTAACCCATTAAAAATTGGGTATATTTTGCACTAAATGTTCAAAATTCTTGTAGCTG
TAAAAAGCTGCCTATTCACTAGTGTTCTTTAAAACAATTGCACCGGTTGGTGCTTTTTATATAT
AACAAGTTTGTATGGTGAAAAATGTTTCATATGCTGCACCATGATTGTGTATGTTGGAAACTGT
TGCATATTTTGTGCAGCAGCTGAGCAGGAACCAAGATGTTCCACTGAAAATTTTGTTGGTAATA
TCAGACATTTCAAGGAAATTGAGATACAAACCTTCAGTTTTCCCATGAAACTGTTTCTTGTCGA
TATTTCAGTGGCAAGGTTGAAATATGTTCCAAAGTGTCTGCCAATATGCTATCGGCCAATATTT
TGTCAGCAGATATATCTTATGACATATGTTGATGCTGACTGCGTACTCCCTTTTTAGTAGAATT
TCTAAGAACAAACCAGTTTTTCCAGTTTACCGAAAAAAAAAAAACCAGAGTTTTTCCAGTTTCA
GTAGTTCATTGTATGTTTGTTTTGGATGACATTGTTAATGATATTTTAGTAGGAGCTGCGTGTA
TTCACTATAGGTTACAGGCAAAATGACTTGCTTTAGAAGCTAGAATTGATTATTCCATGAAAAG
CAGGATTGTAAAAGAAGACTACAATGGACTTATTCAAACATGTAATTTATGCTGTAGCGAAATT
GTTTCTGCAGGCCCTACAGTTTTTGTAGGATGGAATTTGGTATTAAAGTGATACTAAAAGATGA
GTTGTTAAACATTAGATTTTAGTACATCACAATGAGGGAACAAGAGTAGATATTTTGTGCTTTT
ATGTTAGTTAGCAACCGATCATTTGTTTGAACTTATGCAAATATGCATTGTTCTTTCAATGTTT
CTATGCCATCCTTTCTTGTAGTTAATTAGTAATTACGCAGATGGTATTATCTAGTAATCCACCA
CATGCGTAATCTGAAATTCAAGAAAAAAGAATTAGAGTGCTTATAGAATTTATTCGTGCTTTCA
ATCAAGAGAAACAAGTTATTCTTGAAGTGGGTCCTTTAAAACTCCCGCAGCTGAGGTAACACAC
TGATAAATGACTCTACTAACTTCCAATGAAAAATCATTAGAAATTTCTCCAGGGCGGCCTATCC
GGCACCATTTGTTGTGTTAAAGGCTGTACTCTCAGAATATGAAAAGGATTTCTTTCTTCTGCCA
TTTTACGTGAAAATTTTTCCTGTCACAAAATTTGAGGAAATACGATTTGTGTGTGTACAGATAT
CAGATGCAATTAAGAATGAAAAGGTGGTCCACAAGACCATAAAGATATACAATGTTGACCGCGC
AGTTTGTGGACGTATAGCAGGCGTGGTTGCCAAAAAATATGGTGACACTGGTTTTGCTGGGCAG
CTAAACATAACGTAAGATGTGCCATTGTCATAACTTATATAGATACTGTCTGGACTCGGGGGTC
TGCACGGCCCGTCTGTTTTTAGATCAAAGCTAACTAGTGTACTTCATTGTATTCAGTTTTCAAG
GGAGTGCTGGGCAGTCATTTGGGTGCTTCTTGACTCCTGGGATGAACATTCGACTTGTTGGAGA
GGCAAATGATTATGTCGGGAAG
						
					

			
		

Sequences
Splice junction sequence	ATTCAGTTTTCAAGGGAGTGCTGGGCAGTCATTTGGGTGCTTCTTGACTCCTGGGATGAACATT CGACTTGTTGGAGAGGCAAATGATTATGTCGGGAAGagagaagaactgcgtgctcgatttcctg gagtccctggtgatcttgtcaatttttttctatatgttgctgaggaggtaaatttgtctcttta aaatttta
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AGAGAAGAACTGCGTGCTCGATTTCCTGGAGTCCCTGGTGATCTTGTCAATTTTTTTCTATATG TTGCTGAGGAGGTAAATTTGTCTCTTTAAAATTTTATAATTCATGTATTAACAGGTTTAGTGCT TAAGTTTCTCGTCTGTAGTTTTATTCTTTTTTGTTAATTATTGTTTTCTCAGGTAAGAGGTATG TTAGCACAGTTGGGATATGAGAAGTTAGACGATATAATTGGGCAGACAAATTTACTGAGGCCAC GAGATATATCTCTAGTGAAAACTCAGCATCTTGATCTCAGTTATCTTCTCTCAGTATGTGGTTG AATAATATATTATTTTCCTGTCCACGTGTCATATTCTTGGCATAATTTTTTTTTTTTTTCTTAT GGTATTTTCTTTTTTATTCCAGAATGTCGGGTTACCAAAATGGAGCAGTACCACAATCAGGAAC CAAGATGTTCACACTAATGGACCTGTTCTGGATGATGTTTTACTAGCAGATCAAGAGGTAACAC TTTTTTTTTGAGGTGACAGTTGGACTGATGCTTGCTTGTTTAGCTAAATGAACATGGTATTTAC TTTCTGATAACTCTCCTTAGTTTCTCTAAACCAACGGCTTTATGGGCATTCAGATAGGTGGGTG GGAATTTAACATAGGTATTATCTGAATGTTTGAAGTACTAGATGTTCCATGTTAATGGTAAGTG AAGGAAAAGGGAAGGTCTATTTGGACATATTTATGATCACAGGGCATCTGGTATTTCATTTACG TCCAGTCCACTGCTTTTAGTTATGGTTATACCGTTAAATATAATGTTGAGGCTGGTGTTAATGT TTTCTTTTTGTAGGTATACATTTTACTTGCATATAATCCATCCTTTATAACGACCAATTTTAGA ATTTGAAGAGCCCTCATTTCACTTGAATAACATGTTCACTTCTTTGGTGTTAATTACACTTAAC ACCCCTTGAGGTTAATCGAGTTTTCACAAAACCCCTCACGTTTGAGACATTACACTAACACCCC TTTAGGTTTTAATTCTCTTTCATATAACCCCTTGAGTAAAAAATCTCCATATATTTACTAATTT ACCCTTATAATTAAAAAAACCTAAAAATTTTATTGAATAAGAAAATATTTATAAACATGCAAAA GACTGATATCAAAGTAAAATATAGGGAAAAAGAAATTAAGGGAAAAAAAATTTAATTATTACTT TGAAAAACTATTTTATTTAATAAAAAAGAAGCTGTTCATTTCTTTTTCCCCTCCCACGTCCCAC CTCCATTCCATCTCCTCCTCCTTTCTCCATCATCACCATCCATTCAAACTTTTGGCAACCACTT GTCTCCTACCCTAGCCAACATTCTCATCTTCTTCCCATCGGAACCACCTCCATCACCCACCCAT CACAGCCACCTAGCTACCTTTCACCCCCACAATCCGCAAATGTATACCTGATCCAGCAACACAA GGGGCCAGTAGTGGTGGAGATGAAATCTGGAAGCCATGGCAGAAACCCAACCCGCTTCCTGAAA ATTGCATTCCCAGCACCACCACCACCAAAACACAAGTCCCCAAGTCCCCAAAATCCCCACCATC TTCCACTGCCACCGCCACCGCCATTTCCACCCAACCTGATTTTGGTACCAAATTATTATTTTGT TACAGAGATTGATTTTTGGTTTGTTCAAAGTTTGAATTGGTGGTGGTGATGGAGGAAGAAGGAG AAGATGGGGGTGGTTGCTCAGGTGGGAGGGGAAGAAGAAGATGAACAGTTTTTTTATTTTTTTG AATAAAATATTTCTCCTACCCTCTGAGGAATCAATTCCTTTTGAAACTATATGCCATCTTTTTT TTTTTTTTTTTTTTTTTTTTACCAAGCGTCTGCTTATACCTTTTTCTTTGTTCTTTCGCACCCT GTTCAAATCATCATTCCATCATTTCCTGGTTCGTTGTTTGCAAAGTAATATTTAACTTTTTTTT TTCTTGATTTTTTTTTTTGTCCACATGGTCATCTTCTTGTTAATTTTAAATGTTTAATGTTTTG AATCTTTTTTTATATATAATTATAAAGTTTTTCTTTATTAGTTTTAAGTAGTCAATAAGGGCAT ATTAGTAAATTTATAAACAAATTTTTGACTCATGGGGTTATATGAAATGAATTTAAAACCTGAT GGGGTGTTAGTGTAATGTCTCAAACGTGGGGGTTTTGTGAAAACTCGATAAACCTCGGGATCTT AGTGTAATTAACCCATTAAAAATTGGGTATATTTTGCACTAAATGTTCAAAATTCTTGTAGCTG TAAAAAGCTGCCTATTCACTAGTGTTCTTTAAAACAATTGCACCGGTTGGTGCTTTTTATATAT AACAAGTTTGTATGGTGAAAAATGTTTCATATGCTGCACCATGATTGTGTATGTTGGAAACTGT TGCATATTTTGTGCAGCAGCTGAGCAGGAACCAAGATGTTCCACTGAAAATTTTGTTGGTAATA TCAGACATTTCAAGGAAATTGAGATACAAACCTTCAGTTTTCCCATGAAACTGTTTCTTGTCGA TATTTCAGTGGCAAGGTTGAAATATGTTCCAAAGTGTCTGCCAATATGCTATCGGCCAATATTT TGTCAGCAGATATATCTTATGACATATGTTGATGCTGACTGCGTACTCCCTTTTTAGTAGAATT TCTAAGAACAAACCAGTTTTTCCAGTTTACCGAAAAAAAAAAAACCAGAGTTTTTCCAGTTTCA GTAGTTCATTGTATGTTTGTTTTGGATGACATTGTTAATGATATTTTAGTAGGAGCTGCGTGTA TTCACTATAGGTTACAGGCAAAATGACTTGCTTTAGAAGCTAGAATTGATTATTCCATGAAAAG CAGGATTGTAAAAGAAGACTACAATGGACTTATTCAAACATGTAATTTATGCTGTAGCGAAATT GTTTCTGCAGGCCCTACAGTTTTTGTAGGATGGAATTTGGTATTAAAGTGATACTAAAAGATGA GTTGTTAAACATTAGATTTTAGTACATCACAATGAGGGAACAAGAGTAGATATTTTGTGCTTTT ATGTTAGTTAGCAACCGATCATTTGTTTGAACTTATGCAAATATGCATTGTTCTTTCAATGTTT CTATGCCATCCTTTCTTGTAGTTAATTAGTAATTACGCAGATGGTATTATCTAGTAATCCACCA CATGCGTAATCTGAAATTCAAGAAAAAAGAATTAGAGTGCTTATAGAATTTATTCGTGCTTTCA ATCAAGAGAAACAAGTTATTCTTGAAGTGGGTCCTTTAAAACTCCCGCAGCTGAGGTAACACAC TGATAAATGACTCTACTAACTTCCAATGAAAAATCATTAGAAATTTCTCCAGGGCGGCCTATCC GGCACCATTTGTTGTGTTAAAGGCTGTACTCTCAGAATATGAAAAGGATTTCTTTCTTCTGCCA TTTTACGTGAAAATTTTTCCTGTCACAAAATTTGAGGAAATACGATTTGTGTGTGTACAGATAT CAGATGCAATTAAGAATGAAAAGGTGGTCCACAAGACCATAAAGATATACAATGTTGACCGCGC AGTTTGTGGACGTATAGCAGGCGTGGTTGCCAAAAAATATGGTGACACTGGTTTTGCTGGGCAG CTAAACATAACGTAAGATGTGCCATTGTCATAACTTATATAGATACTGTCTGGACTCGGGGGTC TGCACGGCCCGTCTGTTTTTAGATCAAAGCTAACTAGTGTACTTCATTGTATTCAGTTTTCAAG GGAGTGCTGGGCAGTCATTTGGGTGCTTCTTGACTCCTGGGATGAACATTCGACTTGTTGGAGA GGCAAATGATTATGTCGGGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Wang et al., 2018a

circRNA

Detail information of Pbr026758.1_circ_g.1

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