Detail information of AT1G31330_circ_g.1


General Information
CircRNA Name AT1G31330_circ_g.1
ID in PlantcircBase ath_circ_005210
Alias 1:11215025-11215869
Organism Arabidpsis thaliana
Position chr1: 11215025-11215869  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G31330
Parent gene annotation Photosystem I reaction center subunit III, chloroplastic
Parent gene strand -
Alternative splicing AT1G31330_circ_g.2 AT1G31330_circ_g.3 AT1G31330_circ_g.4 AT1G31330_circ_g.5 AT1G31330_circ_g.6 AT1G31330_circ_g.7 AT1G31330_circ_g.8 AT1G31330_circ_g.9 AT1G31330_circ_g.10 AT1G31330_circ_g.11 AT1G31330_circ_g.12 AT1G31330_circ_g.13 AT1G31330_circ_g.14 AT1G31330_circ_g.15
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G31330.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGAAGAGAGGGCGACGGCGGCGGAGAAAGCTTTCATGGATTGAGGTGTGGAGGAGGAGGATT
TGTCATCGGAGCAGACGAATCTTGCGGAGGATTTAGcaatgagatcaccattgagaaactctct
gtaggcagcaacgggccaaatgaaaccacggaagatgatccgactagccaaaggaacatcgatg
atgatctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATGAGATCACCATTGAGAAACTCTCTGTAGGCAGCAACGGGCCAAATGAAACCACGGAAGAT
GATCCGACTAGCCAAAGGAACATCGATGATGATCTCTTTCATCGCGGGTTTCTTCTCACCACTA
ATAGCTATTAAGTAGCTTCTTCCAACCCACCCGATCCATCCAGCAATGTAGAGGAAAAGAATCC
CTGGAGTAATGAACTCTCCCCAATGCCGCTGGTCTCCGTTCACTATCAAGTGCGGTAAACCGTC
TGACCCGCATAACAATCCGTACTTCCCGTAGTTGTCGAACCTAACATACATTCATAAGCACATC
AACTTCAAACCAATCCACAGTTCCACAAGCTCCTCAATAGATCATATCAATGATCAAATTTAAC
ATGTCTAGCAACTTCGAAAACTCACTAACTCACCAAAAAAATCATACTAAAGCAATGGATCTAG
CAAGTAATTCACTAAAACAGAGAAAAACTCTGTTTCAGAACAGAGGAAAGCTCTGTTTCAGAAC
AGAGAAAAAGCTCTGGTTTAACGAAGAAATAGAAATGGAAGACGAACCTGCGTTTGGTTTTCTC
GATCTGAGCATTGAGAGCAAGAGCAGGGGCAGATTCAGGAGCGTAGAGCTTAAGAGAAGATTCA
AGCTTCTTGATCTGTTGCTTCTCTCTTTTAGCGAACTGTTTTGAGTCCTTGCAAGGAGTCAAAC
CTGAGATATCAGCGACAGCTGGCATAGGAGCAGAGAGGAGGATGGAAGAGAGGGCGACGGCGGC
GGAGAAAGCTTTCATGGATTGAGGTGTGGAGGAGGAGGATTTGTCATCGGAGCAGACGAATCTT
GCGGAGGATTTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.280848912
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020