Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0695200_circ_g.2 |
ID in PlantcircBase | osa_circ_003482 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 28747079-28748257 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0695200 |
Parent gene annotation |
Protein of unknown function DUF266, plant family protein. (Os01t 0695200-01) |
Parent gene strand | + |
Alternative splicing | Os01g0695200_circ_g.1 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0695200-01:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.132188528 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
28747325-28748254(+) 28748240-28747134(+) |
Potential amino acid sequence |
MVEAERMLFAAALEDPANQRFVLLSDSCVPLYNFSYIYTYLMASTKSFVDSFVDKTEKRYNPSM SPVILKDKWRKGSQNGEEGKFSVYVHSAPGFQLDRTTTGSSYFYGRQLARSVKVAWGEPTMVEA ERMLFAAALEDPANQRFVLLSDSCVPLYNFSYIYTYLMASTKSFVDSFVDKTEKRYNPSMSPVI LKDKWRKGSQNGEEGKFSVYVHSAPGFQLDRTTTGSSYFYGRQLARSVKVAWGEPTMVEAERML FAAALEDPANQRFVLLSDSCVPLYNFSYIYTYLMASTKSFVDSFVDKTEKRYNPSMSPVILKDK WRKGSQNGEEGKFSVYVHSAPGFQLDRTTTGSSYFYGRQLARSVKVAWGEPTMVEAERMLFAAA LEDPANQRFVLLSDSCVPLYNFSYIYTYLMASTKSFVDSFVDKTEKRYNPSMSPVILKDKWRKG SQ(+) MEERITERRGGQVLGVRPLGAWLPA*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |