Detail information of BGIOSGA017586_circ_g.3


General Information
CircRNA Name BGIOSGA017586_circ_g.3
ID in PlantcircBase osi_circ_006386
Alias 5:29042074|29042698
Organism Oryza sativa ssp. indica
Position chr5: 29042074-29042698  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA017586
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA017586_circ_g.4 BGIOSGA017586_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA017586-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCGGCGGCGGGACTCGTACGGGCGGTAGTCGGTGCGGAGGGCGGAGAGCGGGATGACCTCGGA
GACGGGGAGGTGGTGGGACCTGGACGCGTCGAGCAGcttcctcaccagcattctcttcttccac
atgtttcaatgccttcttcgccttcttcttgccgacacccttcagtgcagctccagcttccgaa
gcatcgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCTCACCAGCATTCTCTTCTTCCACATGTTTCAATGCCTTCTTCGCCTTCTTCTTGCCGAC
ACCCTTCAGTGCAGCTCCAGCTTCCGAAGCATCGATAACCTCCCCGGAACCGACTTCTCCCTCC
AATTGTGCAAACCGGACCTCGATCTTCATGCCCAACTCCGGCACAGCCTGGTAAATTGGTAATG
CAACTGAATCCACAGCCTTCAAATGGAGAGACCTCACATTCGCCCACTTCTTGGGCACATTCTC
CACGGCCGCCTCCACCGCCGCCATCACATTCTCCACGGTGTCCTCTTCCTTCATGTCCAGCCTC
CCAACCTTGATCCCAGAGCAGGTGCCCGTCCGCAGGTAGAGAAAAGTCGAGTTCATCACCTTGC
GGACCTGCTCCAGCCACCCGGTGCGGGCGAAGTCGACGGCGACGGGGGCCTTCTTGGTGGAGTA
GAAGGCCTTGCCGAGGACGCGCGGGAGCAGCGGGAGGACGGCGCGGTCGGCGATGAAGAGGTCG
TGGGAGGCGGCGAGGCGGCGGCGGGACTCGTACGGGCGGTAGTCGGTGCGGAGGGCGGAGAGCG
GGATGACCTCGGAGACGGGGAGGTGGTGGGACCTGGACGCGTCGAGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021