Detail information of BGIOSGA012851_circ_ig.1


General Information
CircRNA Name BGIOSGA012851_circ_ig.1
ID in PlantcircBase osi_circ_013139
Alias Chr03:17836322_17836635(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 18944901-18945214  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTCATGTCCCCCCCCCTCCATGTCTTCCTTCTTCTACTTTCAGTTTCAGCTGGATCTCCGCAT
GATTTGGGGTAAGGGGGAGCATAGCTATGTCCCTTGgagtcttgattgggggaggagagaggga
gagagagaaagagagaggtattcttcttgttcttgtgcttccacttgattcacttccaaatttg
ttcccctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGTCTTGATTGGGGGAGGAGAGAGGGAGAGAGAGAAAGAGAGAGGTATTCTTCTTGTTCTTGT
GCTTCCACTTGATTCACTTCCAAATTTGTTCCCCTTTCAAGATATTCTTTCATGGGGCTGGGTT
CCTGGATTATGGCGCTTGCATGTGTCTTGGTAGAAGTTGTTGACTTGCGGCTTTGGGTTGGGTG
GGTGTGGATTTGCTTCTTGCTTGCTCATGTCCCCCCCCCTCCATGTCTTCCTTCTTCTACTTTC
AGTTTCAGCTGGATCTCCGCATGATTTGGGGTAAGGGGGAGCATAGCTATGTCCCTTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021