Detail information of AT1G79440_circ_g.7


General Information
CircRNA Name AT1G79440_circ_g.7
ID in PlantcircBase ath_circ_011018
Alias 1:29886211-29886426
Organism Arabidpsis thaliana
Position chr1: 29886211-29886426  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G79440
Parent gene annotation Succinate-semialdehyde dehydrogenase, mitochondrial
Parent gene strand -
Alternative splicing AT1G79440_circ_g.1 AT1G79440_circ_g.2 AT1G79440_circ_g.3 AT1G79440_circ_g.4 AT1G79440_circ_g.5 AT1G79440_circ_g.6
Support reads 1/1
Tissues root;flower
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered AT1G79440.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCTTATAATCCTAAACATCCCCATCCAACACTACAAAAGTAAAAGAGAACGCATTGCTACGG
GATAAAAGATTGTACCATCTCCGTAAAACTTTACTCctctccgatggcttccttgagtggtttt
ccttgctccaaagttataagttgtccaagttcttccttgtgtgcaatcaggaggtcatacctgt
gtttggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTCCGATGGCTTCCTTGAGTGGTTTTCCTTGCTCCAAAGTTATAAGTTGTCCAAGTTCTTCC
TTGTGTGCAATCAGGAGGTCATACCTGTGTTTGGTGAAATGAAGTGGCTCAGAACCTTATAATC
CTAAACATCCCCATCCAACACTACAAAAGTAAAAGAGAACGCATTGCTACGGGATAAAAGATTG
TACCATCTCCGTAAAACTTTACTC
Conservation Information
Conserved circRNAs NA
PMCS 0.154322491
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020