Detail information of Os11g0180200_circ_igg.1


General Information
CircRNA Name Os11g0180200_circ_igg.1
ID in PlantcircBase osa_circ_008693
Alias Os_ciR2513
Organism Oryza sativa
Position chr11: 4007389-4009335  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0180200_circ_ig.1
Support reads 8/4
Tissues root/shoot, root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGCTCACATGGCATGACATCACTGTAGCGGTTTTTTTCCCTATTAGCAGGATTTTGAGCAGC
AGTAAATTTTCCCGTCTGGAATGCTGTCTGTATGTCctcattctgctgtacctccaaaccacgc
aattctaagacaccatcgcatttgaactttgtgatcttaacactgaattttccataatcccttt
cttctcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATTCTGCTGTACCTCCAAACCACGCAATTCTAAGACACCATCGCATTTGAACTTTGTGATC
TTAACACTGAATTTTCCATAATCCCTTTCTTCTCCTTCGTTCGTTGGAAGATACCTGTCACACT
GCCATTTTTTCAAAGTTAATAATTTAATAAAATTTTATTAAAGTAATTAGTTGAAAATAGTCGG
AAATTCAAGTTGTATGTCTACATCAATGAACTTAATACATTTTTTGGTATCATCCAGTAATAGA
CAAATACTCCCTACATTCCTAAATGTTTGACACCGTTGACTTTTTTAAACATGTTTGATCGTTC
GTCTTATTCAAAAAATTTAGGCAATTATTAATTCTTTTCCTACCATTTGATTCATTGTTAAATA
TACTTTTATGTATACATATAGTTTTACATATTTCACAAAAGTTTTTGAATAAGACAAACGGTCA
AACATGTTTAAAAAAGTCAACGGCGCCAAACATTTAGGGAAGGAGGGAGTAGTTCTCAAAGTCA
TAATCTCAAAACAATTATATCAAAAACATAAACTAAGACAGAAAATACTATCCAATCATCATAC
TGTAATTGTCATGCAAGTATTTACAGTACTCATTCTACTGTAATATTGAATCGATTACATAAGG
ACAATTTGTTAACACAGCAATCATCTTACATGCCATGCTATTTTCTGTACATCAATTCCAAACA
TGAAATAGACAACCAAAAGTAAATTGTAAATCCAAATCAGATTACACTAAGCACTTCGGTAGAA
ATCAAAGTATTGCAATATGAGCAGGCAGGATCAACTCATGGTTGAGATCAGCATACTGCAATTG
GCTTTTAGCAAGTTAAAATATGCATATGCGAAGCAATCATGAGTGTATTTGGGTTAAGAATTAC
ATAGAACCTCTGAACCTGACAGCTGTATGTGTCAATCGCAAGCATAAAGATTCAAGATCTTAAT
TTTCTGTTCATTTTATGTTCTCAATTGCATATGACAATCTAGGTGATGTATATGTGCCCTCCAT
AGAGATGCAAGCTATTTCATCTTCCAATGGCCAGATTACATATCAATATATGATGATAATAAAA
CCATCTGAGATGATGCATACATGCAAGTATGTAACAGCCGCATCCAGATTTGCAACAGTCAACA
AAAAAATTCATGCCCATTTGAACAAAGCAAAAGAGGGGGATCCATGGAGATGTGAAATTAAGAC
TTCAGCATGACAATGATAATGATAATAAAAATATTAAAACATGTAGGACATAGTTGGATAAGTG
GAGTTGGGGTAGCCTCAACATAATGCAGGGAAAGAGCAACCCAATAATATGTTGTAAAGACAAG
TAAATAAAACTTGGAAACTGAGAATTCAGGAGTGTACAACATTAGCACCTTGGCACCATCAAAT
TTAGTGACCATAACAATCACAGGACACTGGTTTTCGTAGACCATCTGCCAGAAATCCCCAAATG
TCTTGACCAAGGGACCTTGAGTGGAAATGAACTTTGTATGACTTTGACCTTGGTCATCAGTCTG
TAAATATTATACCACATAAATAACCTATAAGGCTATAACAAATCCAGAGGTCCCATGTCCCATC
TAGGATTTGAAACATTCAGTATTGAAAAAGATGGAAACTCGTGTATAACATAAACACCAGGAAA
TATGCCCCTGTGTTTTTACCTCTATAAGGCTTGCATTGATGTATTCATTGCTTGAAGGGTGATC
ACTTGCTGAGGGCTTTAAACGTACCCGGGTTTCATCAACTAAAGAAGAGAAGTTAAGTCAAACT
AATAATACGTCATGGAGGTCTCTTGGCTAACATACAGCAGCCAACACAAGTTGATAATGCTCAC
ATGGCATGACATCACTGTAGCGGTTTTTTTCCCTATTAGCAGGATTTTGAGCAGCAGTAAATTT
TCCCGTCTGGAATGCTGTCTGTATGTC
Conservation Information
Conserved circRNAs osi_circ_003042* osi_circ_009304
PMCS 0.102567155
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017