Detail information of AT1G76930_circ_g.9


General Information
CircRNA Name AT1G76930_circ_g.9
ID in PlantcircBase ath_circ_010557
Alias At_ciR2288
Organism Arabidpsis thaliana
Position chr1: 28895794-28895949  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT1G76930
Parent gene annotation extensin 4
Parent gene strand -
Alternative splicing AT1G76930_circ_g.1 AT1G76930_circ_g.2 AT1G76930_circ_g.3 AT1G76930_circ_g.4 AT1G76930_circ_g.5 AT1G76930_circ_g.6 AT1G76930_circ_g.7 AT1G76930_circ_g.8
Support reads 3
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G76930.1:1
AT1G76930.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGTGGGGAGTGGTATACAACTGGAGGAGGTGAGTAGTGAACCGGTGGTGGTGGAGAGTGGTA
TACGACTGGAGGAGgaggagaatggtataccgtagggggagagtaatggaccggaggaggagga
gatttgtattcgtagtgcttcttgggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGAGAATGGTATACCGTAGGGGGAGAGTAATGGACCGGAGGAGGAGGAGATTTGTATTCGTA
GTGCTTCTTGGGTGGTGGTGGGGAGTGGTATACAACTGGAGGAGGTGAGTAGTGAACCGGTGGT
GGTGGAGAGTGGTATACGACTGGAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.473537019
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015