Plant Circular RNA Database

Detail information of BGIOSGA026447_circ_g.1

			
						 General Information
					
						CircRNA Name
						BGIOSGA026447_circ_g.1
					
						ID in PlantcircBase
						osi_circ_007461
					
						Alias
						7:27638242|27641705
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr7: 27638242-27641705  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA026447						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							BGIOSGA026447_circ_g.2 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA026447-TA:9

General Information
CircRNA Name	BGIOSGA026447_circ_g.1
ID in PlantcircBase	osi_circ_007461
Alias	7:27638242\|27641705
Organism	Oryza sativa ssp. indica
Position	chr7: 27638242-27641705 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA026447
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	BGIOSGA026447_circ_g.2
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA026447-TA:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCATTGTCATGTTGCCTTTCTGGCCTCAAATTCCCCTGTGAGGTCTCTCAGATTTACAGCTTCA
GGGGAGGTCCTTGCAGTGGGATATCAAAACGGTCAGgtatggaatcttgagttcagacaactat
tttattcttcgaagtgggacatcaatataactgcttttgcagttgtagaggggacatttctgat
gtgagcta

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTATGGAATCTTGAGTTCAGACAACTATTTTATTCTTCGAAGTGGGACATCAATATAACTGCTT
TTGCAGTTGTAGAGGGGACATTTCTGATGTGAGCTATATATATGGAAACTTGTCTTCCCCACCG
CTTTAGTTTATTAGGCCAGTGTACCTGTTGGAGTAGTTTGTAGCCTTTTCTTGTATGCTAAATC
CTTTTGCTGCATTCAGGTACCTTGGAGATGAGAATGGCCTGCTTTCAGTACTGAAGTATGACGT
TGATGATGGGAAACTTCAAAAGATGCCCTACAATGTTCCGATACATTCCTTAGCTGGTATGCAA
TTGTCCCTTTTGTGTCTTTGTCAATAAGTGTTTGTGTTAATTTTACACCATCATATATAGATGG
CTTAGCTGTTATACAATTTGCTTCTATTGGTAACTATGCACAAAACTCTAATCCTGAGCAAACA
AGATCATAATATATTACACTAAAGTTTGAACCTTCCATAGAAATATTTGACCTTGGGCCCACCT
GTGTAAATAAATAATCTTATTTACTGCGAGCACAGGCATTTTTGTTCATGCTTTCTTGCAATTT
TGCGTTGTTCTTCATCTGGATTACCAGAAGCACTTGTTATCTGCATAGTATGCCCAATTGAGTT
CACCGATTAGCTGGTCCAAATTATTTACTGACACCTTTTCAGTGAATCGTCTTAACATAGTTTG
CACTTATTGACATTTTTGGTTTAATTTCTTCACAGAAGCAGCTTGCGTTTCCTTAGAGGATCCT
CAATCTATTGTTGGAATACTGCCGCAGCCTGATACCTTTGGGACCAGGTAAGGTCTTCTTCAAT
TGTAACTTGTAGTCTTGTAGAGCTTATGGTCAATACTCAACCACATCTGGTTAGTGTCATTTCC
TTTTTGTTAACAAACATCAAGATAGTATGAATTAGGTATAAGAAATAACCTCACTTCTCTTTTT
GACTTTTTATTACTTGTTAGCATGAAAACATTTCAGGAATGACAAATTACAGAACCATATGTTC
TGAAAAAAAGTGCCAAGTAAAAAACACACACACACACACACACACATTTGAAGCAGATAGTTTG
AAATATGCACTGTAGCTTTATTTCATTCCTTTACTCCCATGCGAGGCTGGATCAATTCATTTTG
CCAATCTGGAATACATAAAATAAACTGTTTTAAATGTTTCAGGGTGCTGATTGCATATGAGAAA
GGACTATTAGTTCTTTGGGATGTATCAGAGGATCGTGCTATTTCGGTTAGAGGCTATGGTGATT
TGCACATGAAGAATCAAATCACAGGTGCACAGAGGGATGCTGGTGAAGATGAAGACAATAATAT
CAGCGCAGAAGAAGAGAGAGAAATTTGCTCCCTTTGTTGGGCATCGCAAGGAGGTTCAACTGTT
GCTGTTGGTTATATAACTGGAGACATTCTTCTGTGGGATATGACTGCAAGATCCTCTAAACAAG
ACAATAGAAGTGATGAACCATCTAATGTTGTTAAACTTCAGCTGGCTTCTGGTAGTCGTAGGCT
TCCTGTTATTGTATTACACTGGTCTTCTCGTTCTGCTGATTCTAACAAAGGAGGGCATCTCTTT
GTATATGGTGGTGATGATATGGGTTCCGAGGAAGTTCTGACGGTTTGTCCCTTGTTTCGTTTTC
CTTTGTTCCTGTTGTTCTTTTTCTCCCTGCTATTTTATAGGCATGGATGTGCGCAATTTATTTA
TCCTCAAGTGAACTCAAATGTAGTTTATTTTTGGATCCTTTGCCTGCTACTTTAATTTTTAAAA
CAATTTTCTTGCATTTAAAAAACCAGACCTTGTATTTTCTTGCAGGTTCTAAGCCTGGAATCAA
CTACTGGATTAGAGTCAACAAGATGTATGTCACGAATGGATCTCAGACTTGATGGGTCCTTTGC
TGATATGATTTTAATTTCAGATAGCGGGTTTCTGTATAAAAGCCGAACATCTGCAGTTTTCATT
TTGACAAATCCTGGGCAATTGAATTTTTATGATGGTGGTGCTCTATTTTCTGTTCCAAAATCAG
AAGAGGGAAAAGCTCAGATTGAAGCACAAAAATTTCCAGTCACAGTTCCAACAACTGATCCCAA
CATAACAGTCACTAATCTTTATTCACTAAATGGAAGGGAATCTCAAAGTATTCCACTTAAGGTA
CAATTATGCATTTATTTTGGATACTTTAACCTAATAAGACTTCATCGTGTGGCTTTTATTAGAT
CACATCTGTACGGCTTTTTCTGTAGAAATTTGTTGTTAAGCAAAATGCCGCACCTTTCATGCAA
CGGAACATGAAATGGCCTTTGACTGGTGGAGTTCCTAGTGAAATGTCAATGAACGAGAATTACA
CCGTGGAAAGAATATACATTGCAGGGTATCAAGATAGTTCTGTGAGAATATGGGATGCAACCTT
TCCAGTTCTGACGCCAATGTTTGTCTTGGATGGAAAGGTCAGTTGTGCTGTGTTATTGCTTGTG
TTGTTCCCTGTTGACAAATAACTAACATGTTAACTCATGCAAGTTATTACTATTTACCACAGGT
GGTTGGTGTAAATATGGATGGAGAAAATTCCGCTGTATCATCACTTGCTTTTTGCTCATTAAAC
ATGACATTGGCTGTTGGCACAACAAGTGGTCTGGTTAGATCAGATCTTTATTTTACAGATCAGT
CCAATTGGTTGGTTATTGAATGCTGACAGTATATTCAAATTCAGTATCTCTTATGTTATTGTAG
GTTCGCATCTATAAGCTTCGTGAACACACTGGAGGTTCAAGCTTTCATTTTGTGAGTGAATCTA
AGCAGGAAGGTATACATTTCATAGAAGTCCTATTTGCATGTGTTTCTTTTTCCTTGTGCGTGAT
CATCTCTTCCATATGCACATACTGCTGCCAGATTTTTACCAAGATAAGTTTATGCTAATTGTCC
TTTATTTTTCAAAACACATAAAAAACACGTCTACCTCATAAGATAGTCTGTCAAGCAGAGGTCA
TACCATGCTTCTTTTGCAAATGAGAAGCGTATGGTGGACAAGAGATCCTAGCTTTAGTCAGTCT
GAATGCTTTTTTTAAAATAAATAAATAAATAGAATACTGATCATGATTAAAAAAAACTTCCGCC
TTGTGCATTAGCAGTCATGCCTTAAATTGATCGAACCTATTCATGTTGATTTTTGCTGTGGTTC
AAATATTTGTACTTGTGCTTAAAATGGTAGGCAGGTCTGTAGTATGTCTGCTTGGAATCACTAT
AGTTTTTTCCCCTGTGAATGTGTGATCCATTTCATCTTCCTTAACAAGTGTCTCATGTGATTTT
TCTCACAGTTCATGTTGTTCAACATGGGAGAGGATTTCATTGTCATGTTGCCTTTCTGGCCTCA
AATTCCCCTGTGAGGTCTCTCAGATTTACAGCTTCAGGGGAGGTCCTTGCAGTGGGATATCAAA
ACGGTCAG
						
					

			
		

Sequences
Splice junction sequence	TCATTGTCATGTTGCCTTTCTGGCCTCAAATTCCCCTGTGAGGTCTCTCAGATTTACAGCTTCA GGGGAGGTCCTTGCAGTGGGATATCAAAACGGTCAGgtatggaatcttgagttcagacaactat tttattcttcgaagtgggacatcaatataactgcttttgcagttgtagaggggacatttctgat gtgagcta
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTATGGAATCTTGAGTTCAGACAACTATTTTATTCTTCGAAGTGGGACATCAATATAACTGCTT TTGCAGTTGTAGAGGGGACATTTCTGATGTGAGCTATATATATGGAAACTTGTCTTCCCCACCG CTTTAGTTTATTAGGCCAGTGTACCTGTTGGAGTAGTTTGTAGCCTTTTCTTGTATGCTAAATC CTTTTGCTGCATTCAGGTACCTTGGAGATGAGAATGGCCTGCTTTCAGTACTGAAGTATGACGT TGATGATGGGAAACTTCAAAAGATGCCCTACAATGTTCCGATACATTCCTTAGCTGGTATGCAA TTGTCCCTTTTGTGTCTTTGTCAATAAGTGTTTGTGTTAATTTTACACCATCATATATAGATGG CTTAGCTGTTATACAATTTGCTTCTATTGGTAACTATGCACAAAACTCTAATCCTGAGCAAACA AGATCATAATATATTACACTAAAGTTTGAACCTTCCATAGAAATATTTGACCTTGGGCCCACCT GTGTAAATAAATAATCTTATTTACTGCGAGCACAGGCATTTTTGTTCATGCTTTCTTGCAATTT TGCGTTGTTCTTCATCTGGATTACCAGAAGCACTTGTTATCTGCATAGTATGCCCAATTGAGTT CACCGATTAGCTGGTCCAAATTATTTACTGACACCTTTTCAGTGAATCGTCTTAACATAGTTTG CACTTATTGACATTTTTGGTTTAATTTCTTCACAGAAGCAGCTTGCGTTTCCTTAGAGGATCCT CAATCTATTGTTGGAATACTGCCGCAGCCTGATACCTTTGGGACCAGGTAAGGTCTTCTTCAAT TGTAACTTGTAGTCTTGTAGAGCTTATGGTCAATACTCAACCACATCTGGTTAGTGTCATTTCC TTTTTGTTAACAAACATCAAGATAGTATGAATTAGGTATAAGAAATAACCTCACTTCTCTTTTT GACTTTTTATTACTTGTTAGCATGAAAACATTTCAGGAATGACAAATTACAGAACCATATGTTC TGAAAAAAAGTGCCAAGTAAAAAACACACACACACACACACACACATTTGAAGCAGATAGTTTG AAATATGCACTGTAGCTTTATTTCATTCCTTTACTCCCATGCGAGGCTGGATCAATTCATTTTG CCAATCTGGAATACATAAAATAAACTGTTTTAAATGTTTCAGGGTGCTGATTGCATATGAGAAA GGACTATTAGTTCTTTGGGATGTATCAGAGGATCGTGCTATTTCGGTTAGAGGCTATGGTGATT TGCACATGAAGAATCAAATCACAGGTGCACAGAGGGATGCTGGTGAAGATGAAGACAATAATAT CAGCGCAGAAGAAGAGAGAGAAATTTGCTCCCTTTGTTGGGCATCGCAAGGAGGTTCAACTGTT GCTGTTGGTTATATAACTGGAGACATTCTTCTGTGGGATATGACTGCAAGATCCTCTAAACAAG ACAATAGAAGTGATGAACCATCTAATGTTGTTAAACTTCAGCTGGCTTCTGGTAGTCGTAGGCT TCCTGTTATTGTATTACACTGGTCTTCTCGTTCTGCTGATTCTAACAAAGGAGGGCATCTCTTT GTATATGGTGGTGATGATATGGGTTCCGAGGAAGTTCTGACGGTTTGTCCCTTGTTTCGTTTTC CTTTGTTCCTGTTGTTCTTTTTCTCCCTGCTATTTTATAGGCATGGATGTGCGCAATTTATTTA TCCTCAAGTGAACTCAAATGTAGTTTATTTTTGGATCCTTTGCCTGCTACTTTAATTTTTAAAA CAATTTTCTTGCATTTAAAAAACCAGACCTTGTATTTTCTTGCAGGTTCTAAGCCTGGAATCAA CTACTGGATTAGAGTCAACAAGATGTATGTCACGAATGGATCTCAGACTTGATGGGTCCTTTGC TGATATGATTTTAATTTCAGATAGCGGGTTTCTGTATAAAAGCCGAACATCTGCAGTTTTCATT TTGACAAATCCTGGGCAATTGAATTTTTATGATGGTGGTGCTCTATTTTCTGTTCCAAAATCAG AAGAGGGAAAAGCTCAGATTGAAGCACAAAAATTTCCAGTCACAGTTCCAACAACTGATCCCAA CATAACAGTCACTAATCTTTATTCACTAAATGGAAGGGAATCTCAAAGTATTCCACTTAAGGTA CAATTATGCATTTATTTTGGATACTTTAACCTAATAAGACTTCATCGTGTGGCTTTTATTAGAT CACATCTGTACGGCTTTTTCTGTAGAAATTTGTTGTTAAGCAAAATGCCGCACCTTTCATGCAA CGGAACATGAAATGGCCTTTGACTGGTGGAGTTCCTAGTGAAATGTCAATGAACGAGAATTACA CCGTGGAAAGAATATACATTGCAGGGTATCAAGATAGTTCTGTGAGAATATGGGATGCAACCTT TCCAGTTCTGACGCCAATGTTTGTCTTGGATGGAAAGGTCAGTTGTGCTGTGTTATTGCTTGTG TTGTTCCCTGTTGACAAATAACTAACATGTTAACTCATGCAAGTTATTACTATTTACCACAGGT GGTTGGTGTAAATATGGATGGAGAAAATTCCGCTGTATCATCACTTGCTTTTTGCTCATTAAAC ATGACATTGGCTGTTGGCACAACAAGTGGTCTGGTTAGATCAGATCTTTATTTTACAGATCAGT CCAATTGGTTGGTTATTGAATGCTGACAGTATATTCAAATTCAGTATCTCTTATGTTATTGTAG GTTCGCATCTATAAGCTTCGTGAACACACTGGAGGTTCAAGCTTTCATTTTGTGAGTGAATCTA AGCAGGAAGGTATACATTTCATAGAAGTCCTATTTGCATGTGTTTCTTTTTCCTTGTGCGTGAT CATCTCTTCCATATGCACATACTGCTGCCAGATTTTTACCAAGATAAGTTTATGCTAATTGTCC TTTATTTTTCAAAACACATAAAAAACACGTCTACCTCATAAGATAGTCTGTCAAGCAGAGGTCA TACCATGCTTCTTTTGCAAATGAGAAGCGTATGGTGGACAAGAGATCCTAGCTTTAGTCAGTCT GAATGCTTTTTTTAAAATAAATAAATAAATAGAATACTGATCATGATTAAAAAAAACTTCCGCC TTGTGCATTAGCAGTCATGCCTTAAATTGATCGAACCTATTCATGTTGATTTTTGCTGTGGTTC AAATATTTGTACTTGTGCTTAAAATGGTAGGCAGGTCTGTAGTATGTCTGCTTGGAATCACTAT AGTTTTTTCCCCTGTGAATGTGTGATCCATTTCATCTTCCTTAACAAGTGTCTCATGTGATTTT TCTCACAGTTCATGTTGTTCAACATGGGAGAGGATTTCATTGTCATGTTGCCTTTCTGGCCTCA AATTCCCCTGTGAGGTCTCTCAGATTTACAGCTTCAGGGGAGGTCCTTGCAGTGGGATATCAAA ACGGTCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							27638333-27641702(+)
						
					

						Potential amino acid sequence
						
							MYLGDENGLLSVLKYDVDDGKLQKMPYNVPIHSLAEAACVSLEDPQSIVGILPQPDTFGTRVLI
AYEKGLLVLWDVSEDRAISVRGYGDLHMKNQITGAQRDAGEDEDNNISAEEEREICSLCWASQG
GSTVAVGYITGDILLWDMTARSSKQDNRSDEPSNVVKLQLASGSRRLPVIVLHWSSRSADSNKG
GHLFVYGGDDMGSEEVLTVLSLESTTGLESTRCMSRMDLRLDGSFADMILISDSGFLYKSRTSA
VFILTNPGQLNFYDGGALFSVPKSEEGKAQIEAQKFPVTVPTTDPNITVTNLYSLNGRESQSIP
LKKFVVKQNAAPFMQRNMKWPLTGGVPSEMSMNENYTVERIYIAGYQDSSVRIWDATFPVLTPM
FVLDGKVVGVNMDGENSAVSSLAFCSLNMTLAVGTTSGLVRIYKLREHTGGSSFHFVSESKQEV
HVVQHGRGFHCHVAFLASNSPVRSLRFTASGEVLAVGYQNGQVWNLEFRQLFYSSKWDINITAF
AVVEGTFLMYLGDENGLLSVLKYDVDDGKLQKMPYNVPIHSLAEAACVSLEDPQSIVGILPQPD
TFGTRVLIAYEKGLLVLWDVSEDRAISVRGYGDLHMKNQITGAQRDAGEDEDNNISAEEEREIC
SLCWASQGGSTVAVGYITGDILLWDMTARSSKQDNRSDEPSNVVKLQLASGSRRLPVIVLHWSS
RSADSNKGGHLFVYGGDDMGSEEVLTVLSLESTTGLESTRCMSRMDLRLDGSFADMILISDSGF
LYKSRTSAVFILTNPGQLNFYDGGALFSVPKSEEGKAQIEAQKFPVTVPTTDPNITVTNLYSLN
GRESQSIPLKKFVVKQNAAPFMQRNMKWPLTGGVPSEMSMNENYTVERIYIAGYQDSSVRIWDA
TFPVLTPMFVLDGKVVGVNMDGENSAVSSLAFCSLNMTLAVGTTSGLVRIYKLREHTGGSSFHF
VSESKQEVHVVQHGRGFHCHVAFLASNSPVRSLRFTASGEVLAVGYQNGQVWNLEFRQLFYSSK
WDINITAFAVVEGTFLMYLGDENGLLSVLKYDVDDGKLQKMPYNVPIHSLAEAACVSLEDPQSI
VGILPQPDTFGTRVLIAYEKGLLVLWDVSEDRAISVRGYGDLHMKNQITGAQRDAGEDEDNNIS
AEEEREICSLCWASQGGSTVAVGYITGDILLWDMTARSSKQDNRSDEPSNVVKLQLASGSRRLP
VIVLHWSSRSADSNKGGHLFVYGGDDMGSEEVLTVLSLESTTGLESTRCMSRMDLRLDGSFADM
ILISDSGFLYKSRTSAVFILTNPGQLNFYDGGALFSVPKSEEGKAQIEAQKFPVTVPTTDPNIT
VTNLYSLNGRESQSIPLKKFVVKQNAAPFMQRNMKWPLTGGVPSEMSMNENYTVERIYIAGYQD
SSVRIWDATFPVLTPMFVLDGKVVGVNMDGENSAVSSLAFCSLNMTLAVGTTSGLVRIYKLREH
TGGSSFHFVSESKQEVHVVQHGRGFHCHVAFLASNSPVRSLRFTASGEVLAVGYQNGQVWNLEF
RQLFYSSKWDINITAFAVVEGTFLMYLGDENGLLSVLKYDVDDGKLQKMPYNVPIHSLAEAACV
SLEDPQSIVGILPQPDTFGTRVLIAYEKGLLVLWDVSEDRAISVRGYGDLHMKNQITGAQRDAG
EDEDNNISAEEEREICSLCWASQGGSTVAVGYITGDILLWDMTARSSKQDNRSDEPSNVVKLQL
ASGSRRLPVIVLHWSSRSADSNKGGHLFVYGGDDMGSEEVLTVLSLESTTGLESTRCMSRMDLR
LDGSFADMILISDSGFLYKSRTSAVFILTNPGQLNFYDGGALFSVPKSEEGKAQIEAQKFPVTV
PTTDPNITVTNLYSLNGRESQSIPLKKFVVKQNAAPFMQRNMKWPLTGGVPSEMSMNENYTVER
IYIAGYQDSSVRIWDATFPVLTPMFVLDGKVVGVNMDGENSAVSSLAFCSLNMTLAVGTTSGLV
RIYKLREHTGGSSFHFVSESKQEVHVVQHGRGFHCHVAFLASNSPVRSLRFTASGEVLAVGYQN
GQ(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	27638333-27641702(+)
Potential amino acid sequence	MYLGDENGLLSVLKYDVDDGKLQKMPYNVPIHSLAEAACVSLEDPQSIVGILPQPDTFGTRVLI AYEKGLLVLWDVSEDRAISVRGYGDLHMKNQITGAQRDAGEDEDNNISAEEEREICSLCWASQG GSTVAVGYITGDILLWDMTARSSKQDNRSDEPSNVVKLQLASGSRRLPVIVLHWSSRSADSNKG GHLFVYGGDDMGSEEVLTVLSLESTTGLESTRCMSRMDLRLDGSFADMILISDSGFLYKSRTSA VFILTNPGQLNFYDGGALFSVPKSEEGKAQIEAQKFPVTVPTTDPNITVTNLYSLNGRESQSIP LKKFVVKQNAAPFMQRNMKWPLTGGVPSEMSMNENYTVERIYIAGYQDSSVRIWDATFPVLTPM FVLDGKVVGVNMDGENSAVSSLAFCSLNMTLAVGTTSGLVRIYKLREHTGGSSFHFVSESKQEV HVVQHGRGFHCHVAFLASNSPVRSLRFTASGEVLAVGYQNGQVWNLEFRQLFYSSKWDINITAF AVVEGTFLMYLGDENGLLSVLKYDVDDGKLQKMPYNVPIHSLAEAACVSLEDPQSIVGILPQPD TFGTRVLIAYEKGLLVLWDVSEDRAISVRGYGDLHMKNQITGAQRDAGEDEDNNISAEEEREIC SLCWASQGGSTVAVGYITGDILLWDMTARSSKQDNRSDEPSNVVKLQLASGSRRLPVIVLHWSS RSADSNKGGHLFVYGGDDMGSEEVLTVLSLESTTGLESTRCMSRMDLRLDGSFADMILISDSGF LYKSRTSAVFILTNPGQLNFYDGGALFSVPKSEEGKAQIEAQKFPVTVPTTDPNITVTNLYSLN GRESQSIPLKKFVVKQNAAPFMQRNMKWPLTGGVPSEMSMNENYTVERIYIAGYQDSSVRIWDA TFPVLTPMFVLDGKVVGVNMDGENSAVSSLAFCSLNMTLAVGTTSGLVRIYKLREHTGGSSFHF VSESKQEVHVVQHGRGFHCHVAFLASNSPVRSLRFTASGEVLAVGYQNGQVWNLEFRQLFYSSK WDINITAFAVVEGTFLMYLGDENGLLSVLKYDVDDGKLQKMPYNVPIHSLAEAACVSLEDPQSI VGILPQPDTFGTRVLIAYEKGLLVLWDVSEDRAISVRGYGDLHMKNQITGAQRDAGEDEDNNIS AEEEREICSLCWASQGGSTVAVGYITGDILLWDMTARSSKQDNRSDEPSNVVKLQLASGSRRLP VIVLHWSSRSADSNKGGHLFVYGGDDMGSEEVLTVLSLESTTGLESTRCMSRMDLRLDGSFADM ILISDSGFLYKSRTSAVFILTNPGQLNFYDGGALFSVPKSEEGKAQIEAQKFPVTVPTTDPNIT VTNLYSLNGRESQSIPLKKFVVKQNAAPFMQRNMKWPLTGGVPSEMSMNENYTVERIYIAGYQD SSVRIWDATFPVLTPMFVLDGKVVGVNMDGENSAVSSLAFCSLNMTLAVGTTSGLVRIYKLREH TGGSSFHFVSESKQEVHVVQHGRGFHCHVAFLASNSPVRSLRFTASGEVLAVGYQNGQVWNLEF RQLFYSSKWDINITAFAVVEGTFLMYLGDENGLLSVLKYDVDDGKLQKMPYNVPIHSLAEAACV SLEDPQSIVGILPQPDTFGTRVLIAYEKGLLVLWDVSEDRAISVRGYGDLHMKNQITGAQRDAG EDEDNNISAEEEREICSLCWASQGGSTVAVGYITGDILLWDMTARSSKQDNRSDEPSNVVKLQL ASGSRRLPVIVLHWSSRSADSNKGGHLFVYGGDDMGSEEVLTVLSLESTTGLESTRCMSRMDLR LDGSFADMILISDSGFLYKSRTSAVFILTNPGQLNFYDGGALFSVPKSEEGKAQIEAQKFPVTV PTTDPNITVTNLYSLNGRESQSIPLKKFVVKQNAAPFMQRNMKWPLTGGVPSEMSMNENYTVER IYIAGYQDSSVRIWDATFPVLTPMFVLDGKVVGVNMDGENSAVSSLAFCSLNMTLAVGTTSGLV RIYKLREHTGGSSFHFVSESKQEVHVVQHGRGFHCHVAFLASNSPVRSLRFTASGEVLAVGYQN GQ(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA026447_circ_g.1

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