Detail information of Os03g0192400_circ_g.1


General Information
CircRNA Name Os03g0192400_circ_g.1
ID in PlantcircBase osa_circ_018314
Alias Os_ciR9066
Organism Oryza sativa
Position chr3: 4808470-4808613  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os03g0192400
Parent gene annotation GRIM-19 family protein. (Os03t0192400-01)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0192400-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCCTTATGCATGCCCAAAAGACATGATGGCATCTTTGGTAGGCTGCGGCAAGCCCCTTGGATT
TCATCAATacaacaaatgcacagcgagtgctttaagagtgagttcctcgtagcaattttttttg
ggtattctggttcaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACAACAAATGCACAGCGAGTGCTTTAAGAGTGAGTTCCTCGTAGCAATTTTTTTTGGGTATTCT
GGTTCAAAAGCCTTATGCATGCCCAAAAGACATGATGGCATCTTTGGTAGGCTGCGGCAAGCCC
CTTGGATTTCATCAAT
Conservation Information
Conserved circRNAs osi_circ_004599* osi_circ_013990
PMCS 0.626889345
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015