Detail information of Os03g0821300_circ_g.6


General Information
CircRNA Name Os03g0821300_circ_g.6
ID in PlantcircBase osa_circ_022494
Alias Os_ciR8972
Organism Oryza sativa
Position chr3: 34477841-34478110  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0821300
Parent gene annotation Similar to TA11 protein (Fragment). (Os03t0821300-01);Similar to
Protein phosphatase 2C 35. (Os03t0821300-02)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0821300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGCGGCCGCCTTCGCGTCAGCCACCAAATCATCCGCGGAGAAGGGAACCACGAACTTGTCGGG
GCGGACGTAGCAGAACGAGTGGCCCAGGCCCTCGTCcggcacagcagcgaacgactccgagctc
tcaaaccccgacgacgcggtggcggacgccgacgactcctccggcatcagcagcagcacggacg
tggacagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGCACAGCAGCGAACGACTCCGAGCTCTCAAACCCCGACGACGCGGTGGCGGACGCCGACGAC
TCCTCCGGCATCAGCAGCAGCACGGACGTGGACAGCGGCGTGGATACGTTGGCACTGAGCGCCG
CCCCGGATATCGCCCGGAACGTGGTCGCCTCCCCCTCCGCCGCCGCGGCCGCCTTCGCGTCAGC
CACCAAATCATCCGCGGAGAAGGGAACCACGAACTTGTCGGGGCGGACGTAGCAGAACGAGTGG
CCCAGGCCCTCGTC
Conservation Information
Conserved circRNAs osi_circ_013829
PMCS 0.221233611
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015