Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os12g0297500_circ_g.8 |
ID in PlantcircBase | osa_circ_011259 |
Alias | Os12circ05119/Os_ciR3687 |
Organism | Oryza sativa |
Position | chr12: 11734617-11740276 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | SMALT, Segemehl, find_circ |
Parent gene | Os12g0297500 |
Parent gene annotation |
Pyruvate phosphate dikinase, PEP/pyruvate-binding domain contain ing protein. (Os12t0297500-01);Similar to Phosphoglucan, water d ikinase, chloroplastic. (Os12t0297500-02) |
Parent gene strand | - |
Alternative splicing | Os12g0297500_circ_g.4 Os12g0297500_circ_g.5 Os12g0297500_circ_g.6 Os12g0297500_circ_g.7 Os12g0297500_circ_g.9 Os12g0297500_circ_g.10 |
Support reads | 3/2 |
Tissues | leaf and panicle/root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os12t0297500-01:9 |
Conservation Information | |
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Conserved circRNAs | osi_circ_010445 |
PMCS | 0.112374595 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
11739954-11734619(-) |
Potential amino acid sequence |
MMYYGKTTSAKDVLVIRKIHPFLPSFKSEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQNKL HRNAGPEDLIATEVMLARITKTPGEYSETFVEQFTIFYSELKDFFNAGSLFEQLESIKESLNES GLEVLSSFVETKRSLDQVDHAEDLDKNDTIQILMTTLQSLSSLRSVLMKGLESGLRNDAPDNAI AMRQKWRLCEISLEDYSFVLLSRFINTLEALGGSASLAKDVARNTTLWDTTLDALVIGINQVSF SGWKTDECIAIGNEILSWKQKGLSESEGCEDGKYIWSLRLKATLDRARRLTEEYSEALLSIFPE KVMLEVVRGILSESFDDQSRLGALVYSAIYLKWIYTGQISCFEDGGHHRPNKHAEISRQIFREL EMMYYGKTTSAKDVLVIRKIHPFLPSFKSEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQNK LHRNAGPEDLIATEVMLARITKTPGEYSETFVEQFTIFYSELKDFFNAGSLFEQLESIKESLNE SGLEVLSSFVETKRSLDQVDHAEDLDKNDTIQILMTTLQSLSSLRSVLMKGLESGLRNDAPDNA IAMRQKWRLCEISLEDYSFVLLSRFINTLEALGGSASLAKDVARNTTLWDTTLDALVIGINQVS FSGWKTDECIAIGNEILSWKQKGLSESEGCEDGKYIWSLRLKATLDRARRLTEEYSEALLSIFP EKVMLEVVRGILSESFDDQSRLGALVYSAIYLKWIYTGQISCFEDGGHHRPNKHAEISRQIFRE LEMMYYGKTTSAKDVLVIRKIHPFLPSFKSEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQN KLHRNAGPEDLIATEVMLARITKTPGEYSETFVEQFTIFYSELKDFFNAGSLFEQLESIKESLN ESGLEVLSSFVETKRSLDQVDHAEDLDKNDTIQILMTTLQSLSSLRSVLMKGLESGLRNDAPDN AIAMRQKWRLCEISLEDYSFVLLSRFINTLEALGGSASLAKDVARNTTLWDTTLDALVIGINQV SFSGWKTDECIAIGNEILSWKQKGLSESEGCEDGKYIWSLRLKATLDRARRLTEEYSEALLSIF PEKVMLEVVRGILSESFDDQSRLGALVYSAIYLKWIYTGQISCFEDGGHHRPNKHAEISRQIFR ELEMMYYGKTTSAKDVLVIRKIHPFLPSFKSEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQ NKLHRNAGPEDLIATEVMLARITKTPGEYSETFVEQFTIFYSELKDFFNAGSLFEQLESIKESL NESGLEVLSSFVETKRSLDQVDHAEDLDKNDTIQILMTTLQSLSSLRSVLMKGLESGLRNDAPD NAIAMRQKWRLCEISLEDYSFVLLSRFINTLEALGGSASLAKDVARNTTLWDTTLDALVIGINQ VSFSGWKTDECIAIGNEILSWKQKGLSESEGCEDGKYIWSLRLKATLDRARRLTEEYSEALLSI FPEKVM(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015 |