Detail information of Os12g0297500_circ_g.8


General Information
CircRNA Name Os12g0297500_circ_g.8
ID in PlantcircBase osa_circ_011259
Alias Os12circ05119/Os_ciR3687
Organism Oryza sativa
Position chr12: 11734617-11740276  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene Os12g0297500
Parent gene annotation Pyruvate phosphate dikinase, PEP/pyruvate-binding domain contain
ing protein. (Os12t0297500-01);Similar to Phosphoglucan, water d
ikinase, chloroplastic. (Os12t0297500-02)
Parent gene strand -
Alternative splicing Os12g0297500_circ_g.4 Os12g0297500_circ_g.5 Os12g0297500_circ_g.6 Os12g0297500_circ_g.7 Os12g0297500_circ_g.9 Os12g0297500_circ_g.10
Support reads 3/2
Tissues leaf and panicle/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0297500-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTAAGGAGAAACCTTCAGATAAATAGCTGAGTATACAAGGGCCCCCAGACGACTCTGGTCATC
AAAAGATTCTGACAATATCCCGCGAACAACCTCTAAcattactttttcagggaatatagaaaga
agtgcttcagagtactcttccgttaatctccgtgctctgtccagtgtagctttaagtcttagtg
accaaata
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1155
Transcript exons: 11734617-11734735,11734843-11735048,11736835-11736887,11
736967-11737134,11737488-11737572,11738826-11739004,1173
9083-11739208,11739920-11740051,11740190-11740276
CATTACTTTTTCAGGGAATATAGAAAGAAGTGCTTCAGAGTACTCTTCCGTTAATCTCCGTGCT
CTGTCCAGTGTAGCTTTAAGTCTTAGTGACCAAATATATTTCCCATCTTCACAACCTTCACTTT
CAGATAGACCTTTTTGCTTCCAGGAAAGAATCTCATTCCCTATGGCAATACATTCATCTGTTTT
CCAACCTGAAAAGCTAACTTGATTGATGCCAATGACAAGGGCATCAAGAGTAGTATCCCATAGA
GTAGTATTTCTAGCTACATCCTTTGCAAGTGAAGCTGATCCACCTAAGGCTTCAAGAGTATTGA
TGAATCTGCTTAACAGAACAAATGAATAATCCTCAAGACTAATTTCACAAAGGCGCCACTTTTG
TCGCATTGCTATAGCATTATCAGGCGCATCATTTCTAAGGCCACTTTCAAGGCCCTTCATTAGA
ACCGATCTTAGAGAAGATAATGATTGCAAGGTAGTCATCAAAATTTGAATGGTATCATTTTTAT
CCAAATCTTCTGCATGATCCACTTGGTCCAAACTCCTTTTGGTTTCCACAAAGGATGAGAGAAC
TTCTAAGCCTGACTCGTTCAGAGATTCCTTGATGGACTCCAGTTGCTCAAATAGGCTGCCAGCA
TTGAAGAAATCTTTTAGTTCGCTATAAAATATCGTGAATTGTTCAACAAATGTTTCACTGTATT
CTCCAGGGGTCTTAGTAATCCTAGCAAGCATGACTTCTGTAGCAATAAGATCCTCAGGTCCAGC
ATTACGATGAAGTTTGTTTTGTATAGTATGCTTGATTTCTTGCTTGAGATCATGTGGGATGTCA
TTCCGGTGAGCAATATCACGAATTCGTGTTAGAGGGACAGAGGCTGTAAACTCTGACTTAAATG
AAGGTAAAAAGGGATGAATTTTGCGAATCACGAGAACATCCTTGGCTGATGTGGTTTTCCCATA
ATACATCATTTCAAGTTCACGGAATATTTGCCTCGATATCTCAGCATGTTTGTTAGGCCGATGG
TGGCCACCATCTTCAAAGCACGATATCTGACCTGTATAAATCCACTTCAGATAAATAGCTGAGT
ATACAAGGGCCCCCAGACGACTCTGGTCATCAAAAGATTCTGACAATATCCCGCGAACAACCTC
TAA

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_010445
PMCS 0.112374595
Functional Information
Coding potential Y
Potential coding position 11739954-11734619(-)
Potential amino acid sequence MMYYGKTTSAKDVLVIRKIHPFLPSFKSEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQNKL
HRNAGPEDLIATEVMLARITKTPGEYSETFVEQFTIFYSELKDFFNAGSLFEQLESIKESLNES
GLEVLSSFVETKRSLDQVDHAEDLDKNDTIQILMTTLQSLSSLRSVLMKGLESGLRNDAPDNAI
AMRQKWRLCEISLEDYSFVLLSRFINTLEALGGSASLAKDVARNTTLWDTTLDALVIGINQVSF
SGWKTDECIAIGNEILSWKQKGLSESEGCEDGKYIWSLRLKATLDRARRLTEEYSEALLSIFPE
KVMLEVVRGILSESFDDQSRLGALVYSAIYLKWIYTGQISCFEDGGHHRPNKHAEISRQIFREL
EMMYYGKTTSAKDVLVIRKIHPFLPSFKSEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQNK
LHRNAGPEDLIATEVMLARITKTPGEYSETFVEQFTIFYSELKDFFNAGSLFEQLESIKESLNE
SGLEVLSSFVETKRSLDQVDHAEDLDKNDTIQILMTTLQSLSSLRSVLMKGLESGLRNDAPDNA
IAMRQKWRLCEISLEDYSFVLLSRFINTLEALGGSASLAKDVARNTTLWDTTLDALVIGINQVS
FSGWKTDECIAIGNEILSWKQKGLSESEGCEDGKYIWSLRLKATLDRARRLTEEYSEALLSIFP
EKVMLEVVRGILSESFDDQSRLGALVYSAIYLKWIYTGQISCFEDGGHHRPNKHAEISRQIFRE
LEMMYYGKTTSAKDVLVIRKIHPFLPSFKSEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQN
KLHRNAGPEDLIATEVMLARITKTPGEYSETFVEQFTIFYSELKDFFNAGSLFEQLESIKESLN
ESGLEVLSSFVETKRSLDQVDHAEDLDKNDTIQILMTTLQSLSSLRSVLMKGLESGLRNDAPDN
AIAMRQKWRLCEISLEDYSFVLLSRFINTLEALGGSASLAKDVARNTTLWDTTLDALVIGINQV
SFSGWKTDECIAIGNEILSWKQKGLSESEGCEDGKYIWSLRLKATLDRARRLTEEYSEALLSIF
PEKVMLEVVRGILSESFDDQSRLGALVYSAIYLKWIYTGQISCFEDGGHHRPNKHAEISRQIFR
ELEMMYYGKTTSAKDVLVIRKIHPFLPSFKSEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQ
NKLHRNAGPEDLIATEVMLARITKTPGEYSETFVEQFTIFYSELKDFFNAGSLFEQLESIKESL
NESGLEVLSSFVETKRSLDQVDHAEDLDKNDTIQILMTTLQSLSSLRSVLMKGLESGLRNDAPD
NAIAMRQKWRLCEISLEDYSFVLLSRFINTLEALGGSASLAKDVARNTTLWDTTLDALVIGINQ
VSFSGWKTDECIAIGNEILSWKQKGLSESEGCEDGKYIWSLRLKATLDRARRLTEEYSEALLSI
FPEKVM(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015