Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G06720_circ_g.4 |
ID in PlantcircBase | ath_circ_001040 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 2065132-2066614 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G06720 |
Parent gene annotation |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Parent gene strand | - |
Alternative splicing | AT1G06720_circ_g.5 |
Support reads | 4 |
Tissues | seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G06720.1:4 AT1G06720.2:4 AT1G06720.3:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.153463182 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2066565-2065134(-) |
Potential amino acid sequence |
MVDCAKVADLALLVVDGSYGFEMETFEFLNIMQVHGFPRVMGVLTHLDKFNDVKKLRKTKHHLK HRFWTEIYHGAKLFYLSGLIHGKYTPREVHNLARFVIVIKPQPLTWRTAHPYVLVDRLEDVTPP EKVQMDKKCDRNITVFGYLRGCNFKKRMKVHIAGVGDFIVAGVTALTDPCPLPSAGKKKGLRDR DKLFYAPMSGIGDLVYDKDAVYININSHQVQYSKTDDGKGEPTNKGKQRRFQFVECPNDINAMV DCAKVADLALLVVDGSYGFEMETFEFLNIMQVHGFPRVMGVLTHLDKFNDVKKLRKTKHHLKHR FWTEIYHGAKLFYLSGLIHGKYTPREVHNLARFVIVIKPQPLTWRTAHPYVLVDRLEDVTPPEK VQMDKKCDRNITVFGYLRGCNFKKRMKVHIAGVGDFIVAGVTALTDPCPLPSAGKKKGLRDRDK LFYAPMSGIGDLVYDKDAVYININSHQVQYSKTDDGKGEPTNKGKQRRFQFVECPNDINAMVDC AKVADLALLVVDGSYGFEMETFEFLNIMQVHGFPRVMGVLTHLDKFNDVKKLRKTKHHLKHRFW TEIYHGAKLFYLSGLIHGKYTPREVHNLARFVIVIKPQPLTWRTAHPYVLVDRLEDVTPPEKVQ MDKKCDRNITVFGYLRGCNFKKRMKVHIAGVGDFIVAGVTALTDPCPLPSAGKKKGLRDRDKLF YAPMSGIGDLVYDKDAVYININSHQVQYSKTDDGKGEPTNKGKQRRFQFVECPNDINAMVDCAK VADLALLVVDGSYGFEMETFEFLNIMQVHGFPRVMGVLTHLDKFNDVKKLRKTKHHLKHRFWTE IYHGAKLFYLSGLIHGKYTPREVHNLARFVIVIKPQPLTWRTAHPYVLVDRLEDVTPPEKVQMD KKCDRNITVFGYLRGCNFKKRMKVHIAGVGDFIVAGVTALTDPCPLPSAGKKKGLRDRDKLFYA PMSGIGDLVYDKDAVYININSHQVQYSKTDDGKGEPTNK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Pan et al., 2017 |