Detail information of Zm00001d032291_circ_ig.1


General Information
CircRNA Name Zm00001d032291_circ_ig.1
ID in PlantcircBase zma_circ_006788
Alias zma_circ_0000410
Organism Zea mays
Position chr1: 220609370-220613945  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTGTCCAGCCACGACGGCTGCACATCGGCGAGGAAGCACTCGGCTCCGTTGTCCCCGCCCGA
GGCAACCATGGTCGCATCCTGCGTGCGCCCGTGAAGgtggcgcgcggcagcgtttccgttggct
tggcgaggacacggttgtagatgaagcccccaggaacaaaacgatgtcgaagatgaagcacccc
aacggcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGCGCGCGGCAGCGTTTCCGTTGGCTTGGCGAGGACACGGTTGTAGATGAAGCCCCCAGGAA
CAAAACGATGTCGAAGATGAAGCACCCCAACGGCAGCAATCCCATTCCCCACGGCGCCCTCCCC
GCATGCTTGGCCCGGCGTAGGACAACCCAGGGCTACGACAGCTGAGAATTTATAGAAGCCAGGG
AAAACAAATCCATGCGGGCGAGGCGAGGGGATCGGCGAACAAACTCCAGGAATTGCGGCGAGCT
ACAGGCGGACTCCGCACGGACGGTTGCTGGGCAGCTCAGATTCGTTGTGAGGTTTACGGCGTCG
GAGATGAACCTGACAAGTGGGTCCCAGGTGTAGGTGACACGGCAAGGGAAGTGCGTCAGAGTGG
GAGCCAGGCGAGGGGGTGAGGCTGGCACATGGGGCCCGCCTATCGGCGCGGGATGCCCATAACT
GCAAGGTGGGTCGCGTGAGAGGGGGGGAAAACTAGGCCGGCTAAGTTCAATTTGGCCCAATGAG
TAGATTAGTGTTTTTTTTGTTTCTTTTCTTTTCCTATTTCCTATTTTCAAATTCCAATTAGATT
TTAAATTCAAACAAAGTTCTAATTTGCACACCAAAATATATTTCAGCATGAATGCAAGGTTCAT
GTATTAAGTTTATTCTTTTATTCATTACCTTATACAAATTTTAGGACTTTACAAATCCTACCCC
CTTAAAAATAATCTCGTCCTCGAGATTTGTAAGGACAGGGATGTGAAAAGCTTTACTTATAGTT
TAGCCTTTAACTTCTAATTAGTTTAAGAATAATAAGTTTCATGTTATAAGTGGTTATGAAAGCA
TGGGTATATATATGTATAGTCACCTGATTGTATAGGATAAAAGGTAGGTTAGGGCAAGGATAAC
CTCGGGTAAGCAAGTTTATGATGGGAAAGAATTCCGTGTTGAGTGGTAACGCATCGGAAGATCG
AGTTTGACTTCTCTCCTTCCTTGACGAGTTTTGGTCTTTTTGGCCTTCATCCTTGGAGTCGCCA
TCCATATCAAGGACATATGGTTAAAATAGTTGTCGGTGCTTGGGATGGGTAGGCCCAACAAGAT
TTACTTTGCTTTTGGAGTAGGTGAATTTAGGTAACGTATCAAGCAGGTTAGGTAATTGTGCATG
GCCGAGTTGATCTCAAGCACTAGTTTAGGTTTAGGTGCATTAGGGAAAAACAAGGGTCATATGA
GTAGGATCTAGTTTATTTCACTGGTGTTAATTTGGTAAGTGCCTCACATTAGATTGGATAAGAT
CTAGATTAGTTTGGCATGACTAGATTAGACTAGATAAGATCTCATTATTTTGGATTAGATCCTG
GTTGTTATTTTAGGATGAGATAAGTAAAGTGGTTAGGATAAGATGAATCTTTCAAGATAAAATG
AACATGTTAAGATAAGAGAGAGTCTTTTAAGATAAGATGGATCTATTAGGCTTGATATATTCTA
GTGGGGGTATTCTTAGTTGGTCTAGTTTATCTTAAAAGCAATTTAAGAGGATAAGATAATTTTT
TTAACACAATATAAACCTATTAGGATGAGAATCCTTTAAGTTAAGAGGGATCTATTTAAAATAG
ATACACTTTAATGGGGAATAAACCAGGTTGTTTAGTTATTTTATAAATTTTATTTATTTATATT
TATACCTATATGTATATGCAGATGTAATTGTGGACATTACTCCACAACTTATCACACTCAATCA
AAGATCCAAATCAGACAAGTATCATAAGAACAAACATTCAAGCATACAAATATTTACAAAAATA
GTTTTGATTTTGTTCCTAAGAGTAGGTCTCCTATTCCTAAAGATCAATTTAGGTACAGGATTTC
AAAGTGTGAAATCCACTTTTGTCTTTAGAAGGAAAAAGGTAAGAATAATCAGAGTAGGAATAAT
CAGAGTAAAGCGGAAATAGGTGAGAAAAGATTAAGAAAAGTTCAGAAAGAATCAGAGTAGCAAA
GGTAAGTAGGTAATGGTTGTCCAGTTCTATCTAGGTTTCGTCCTATAGTCAACATTCCTCTGAT
ACCACTTCTGTCACACCCGGGTTTCGGGGCACCAAGACCCGGGCGCGAACAATCACCAGGTGTG
CTCGGACCAAGTCTCACACATATGATGATTCATGGCACAGGATCGAATGTCACATCTTTACTAT
ATAATAGGGGTTTTGTACAAAATAAATAAATAATTACATTATAAGGAGACAACGGTCCAGCAAC
CAAAAGTTGACTGGGAGACGATGACCTAGACCTCTCACGAACACACCGCAGCATCCTCCAAGCG
CCTCGTCCTGCGGTACCTGTTCTTGACCTGTGGGGGTGTGAGACAGCAAGAGTGAGCTCACATA
CGTTCATCGCTCAACAAGTTGTGGGAAATAATGTGCATGAACTCGCCAAAAGTGGGAGCTCACT
TGAAGTGTAAGGCTTACCAAAGAGGATGGTTTGAGATGAGCATTGCTTTTGAAGTTGGTCAAAA
TTTTATTAGCAGTTACTAAGTATAAGTAAATACCAACCCAATTAAGTAGTAGAACAAAAGGAAC
AACATCACCAGCAATGCAATGCATATGACAAATTGAATTTAGTTCCATAGATTAATCATGTGAG
TGTCCGAGCTGCTCATGACCGTGAGCACGGCTAGTATACCAGTTTTACACTCTGCAGAGATTGC
GCATCTTTACCCACAAGTCATGTTACCCATCTACCAAGAGACGGCCAATCCCATACACCTCTAC
CGAGGAGGCGAGGCAGGGTAACACTATGAGGCCTTTACAAAGTTCCACTAGCTTCAGAAAACCC
GCTACAGTTTATAGGAAGCTCCAATGCAGGAATCCCTCGCATGACCGCCATCGCAGCAAAATCA
TCCCAAGGGCCTCCCTACACTGACCACTCCCTTACTGCCCTTGCCCCTTTCGGGTAAGGTAGTC
ATCCACTAGCTTTCCTAATTAATCAGCCAAGGGCGTCCATAAACCCTTGTGGTAGCACTGTTTT
CCTCGGTGGTTCTCCATGTTCCAATTAACATAATGATCTTATCATGAACAGTAAATAATAAACA
GATAATAAAAAGTGTAATCATGAATAGTGTATCTCCATACCCAAAACCACATAAAGCAATAGCA
AGTACTACCCAAAAGTCCAGTGGTAATCAAGGTATAAAGATAGTCAAACTGGGGTAACCTATTG
GGTCCCATCAAAATTAACCTATGCAGATCATTATGATTAATCAGAACATGACTGGGTAAAAAGA
AGTGATCAAGGGCACAACTTGCCTGGGACTTGAGATTCCAGGTACTAGGATGATCTTCATATTC
TCGTGACCTCACTGCTAGTCGTAGCAATACAGACAAACATGGTATATGCAAAATTAACATCACA
CCATACATAAGAATAAACTACGTAATAATAATCTACGCGTCGCTACGAGATCGAGGGAACGAGA
ATCACTAAATTCGGAGTTACGGTTAAGATTTATGAATTTCTAAAGTTATTAACCACCTAGAATA
GATTAATTCAAATGAACAATTTTAATTCAAGTTTCATGACTAACAGTGTTAATAGTTGTTAGAA
AATGTTAATAAAAAATTATTGCAACTAGAATGACTCAATTTGGAGCTAAAATGAATTAACTATG
AATTATAGAAGTTTATAGAATTATTTTCATACTAAAACCTATTTCTTTACTAATTTCTAAATAT
CCTAAGTGTTCTGGACTGGGCACAATATTTCTTAAAAGATCAAGGGCCTAAATCATAATTTTCC
CAAGACTCAGTATTCCTACAGTGTGGACTGCGGGTTTATATTTTAGAAACCAGAGGGCTCTTTT
ATAATTTGTCATGGCCGAAGGGGTACGCACAATTCCCGACCATCCGATCCCACGCGGATGGCCC
AGATTAAATAAACGAAGGGGTAAGTTGATTCTAATCTCAGGCGCCGGTGAACTTCTCAACGACC
CAGATTTTAATCAATGGGTTGAACTCAGGCGCACACGATCCGTATCCAACGACGCGAAGAATCG
CCCCAAACCGGTATCGCCCGCCATCATCTCGACCATTCATTCACGGATCGACGACCGATACGAA
TAGGCGCTCAGATTAAATCTCGACCGCCCACCGAATCGGACGGCCGAAGGCACTTCTTCAACCT
CCCCCATGCCAGTGGGCAAGCGGCGGAGCGCGCTTACCACAGCGGCGCCGTATGGCGGAGGCCA
TGATCGGCGCCCGCAGCGTTTCGGTCCACCGAACCCCACACAAACCAAAGTTACAACATGTGGC
CATGGGACGAATCTGATCGTAGTATCTTACCGGTGAGTCATGATAAGCGGGCTCCCCATTGGTG
GTAAACAACTTTGTCGCTCCCCCCGCAGCGCTACCGCCCACGAAGAGCTTGAACGAGTTGCTGG
ACGACCCGCGATGGTTGGGCCAGCCGTGCGACCGCGCCGGAGTCTTGGGCCCATCGAGCAGGTT
GTCCAGCCACGACGGCTGCACATCGGCGAGGAAGCACTCGGCTCCGTTGTCCCCGCCCGAGGCA
ACCATGGTCGCATCCTGCGTGCGCCCGTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.080581557
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description regulating the response to N deficiency
Other Information
References Ma et al., 2021b