Detail information of AT2G05940_circ_g.2


General Information
CircRNA Name AT2G05940_circ_g.2
ID in PlantcircBase ath_circ_012946
Alias At_ciR298
Organism Arabidpsis thaliana
Position chr2: 2289183-2289285  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ
Parent gene AT2G05940
Parent gene annotation Serine/threonine-protein kinase RIPK
Parent gene strand -
Alternative splicing NA
Support reads 7
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G05940.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGTGATCTCCATGAAACTTTCTTCTTCACCGCCATTGTTGTTGATTTTGTgtttctttgaaga
tgccattagggtttctggatctcctaaacatccaacgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTCTTTGAAGATGCCATTAGGGTTTCTGGATCTCCTAAACATCCAACGATTAGTGATCTCCA
TGAAACTTTCTTCTTCACCGCCATTGTTGTTGATTTTGT
Conservation Information
Conserved circRNAs NA
PMCS 0.272516643
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015