Detail information of BGIOSGA020588_circ_igg.1


General Information
CircRNA Name BGIOSGA020588_circ_igg.1
ID in PlantcircBase osi_circ_000840
Alias NA
Organism Oryza sativa ssp. indica
Position chr6: 31357039-31358370  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method DCC
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA020588_circ_g.1 BGIOSGA020588_circ_g.2 BGIOSGA020588_circ_g.3 BGIOSGA020588_circ_igg.2 BGIOSGA020588_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CA-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCTGCTAGTTCCAGTTAGCAACAAGATAAGCGCATAACAGAAAAGTAAATTAACTAGGCACA
TGAACTGGGAAAACAAAGCAATATATGAAGAAGATAaaggaataacagaaacatgtcaaacaga
ttttcagaatagtccaataacataacataaagagatgaaacgtatacagctggcttaactactt
tcaatttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGGAATAACAGAAACATGTCAAACAGATTTTCAGAATAGTCCAATAACATAACATAAAGAGAT
GAAACGTATACAGCTGGCTTAACTACTTTCAATTTCCTGCTGCTTAGTATTCTAAGAGAATTAG
TTACTTAAATAACACAAAAAGGATAGCTAAGTTGAGATCAAATTGAGATCTTTGGTGACACATC
AACCTTAGTAGACTTTGTATAACATCAATGAAACATGCTCCCAGGAAATCTAACTCTAATCATA
TTAAGAATTGTACAATCATTAATGAATCATGCTCTCAGAAAGTCTAAATAGTGTTAAACCGCAA
ACCAAATGCAAAATACAAACAACTAAGATAATGCTAACCTGATCCTTGAAACCACGAGAAAGCA
TTTCATCAGCTTCATCAAGGACAAACATCTTGATGTAATCAGGACGGAGGGACTGCCTACGCAG
CATGTCAAACACACGACCAGGTGTTCCAACAACAACATGCACTCCACTTGCAAGAATCCTTTGG
TCCTCACGAACAGAAGTACCTCCAACACAAGCATGAACCTTCACACCCAGATAGTCACCAAGTG
CGCGCATGACTTTCTCAATTTGCTGTGCAAGCTCACGAGTAGGAGCAAGGACCAAGGCCTGGCA
CTCAACCACAGCATAGTCAAGTTGCTGCAAAATTCCAGAACAGAAGGTGGCAGTCTTTCCTGTT
CCTGACTGAGCTTGCTGAATCACATCAAGACCCTTGCAGAAAGGGACAATACCCCTTTGCTGAA
TGGCTGAAGGCTTCTCGAAACCTATAAAACAAAAGAAAAGGTCTGATGAATAACAGTTCAAATG
GCAAACACACAAAAAAAAGCACGAAAGATTATAAACCTACCATAGGCATAGATGCCTCTGAGAA
GGTTCTCTTGGAGACCCATGTCATCAAAACTCTCATGAACTTCATCATAAGATGTGAAGAACTC
CTCGGTTTCACCTTGGTTCCTGCATTAAAAGACTACCCAGTAAGCGGTAGATCCTGTACAGGAA
ATAGACAGACATTGCCGTACACAATGATGGCTGCGATAAGACGTATCAGTATAAGATTCCTTAC
AGAAGCTCCTGCATTTTAGAATCATAGTGCTTAGCATCAAACTGGGATCCCTCTGGTGCCATTC
CCGCCATGACTGTGGTAATAAGATAATATGTTAGCCAAAAGAACAGAAAGTAGGACAGAGGAGA
ACATGCGTGATGGAGATATCTGCTAGTTCCAGTTAGCAACAAGATAAGCGCATAACAGAAAAGT
AAATTAACTAGGCACATGAACTGGGAAAACAAAGCAATATATGAAGAAGATA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019