Detail information of BGIOSGA009506_circ_g.1


General Information
CircRNA Name BGIOSGA009506_circ_g.1
ID in PlantcircBase osi_circ_013847
Alias Chr03:37795423_37796064(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 39319970-39320610  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA009506
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAACTGCAATCACCATAAAACCTGCTTAGAGGAATAGGTAATTCCTAGGGAATGTATTAATCGT
CAGAATGGAGAAATAATGGGTGTTTTGTACACTGACaacaatataccgtatacgacatacaaac
tatgttttcagtaaaccagggtcagcccatttatccaatgatgagaaagctcacaaacctattc
aagggcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACAATATACCGTATACGACATACAAACTATGTTTTCAGTAAACCAGGGTCAGCCCATTTATCC
AATGATGAGAAAGCTCACAAACCTATTCAAGGGCATCGCCTTCATTTCACGAGAGGGTTTATAT
AACTTGAAGAAATAGCATCATACTATCATGCAGAATCAGGCTAAATCAAAAGATTTGCAAGAAA
TAAAAGGGAGATATCCACTTAGAACATGCATGAGTTGTTCCTTCTTGTTGCGCTTATACTGTTT
GGGATTCTTTTTTTCGTTTGCTTGTTCTTTCATCAGGTTAAAAGACTACCCCATTGAGGTATCA
AGACTGCAACTGGTGCAAGTCGTCTGGTTTTCCTTCCCCAGGGCTTTATCATAACGCTTTTAGA
TGAAGCTAAAATTTTTGGCAAGCAAAGCTACTGTTCAAATTAAACTTCATGTTTGCTTTCCTCC
ACACACAGTTTCTAGTCGTTTAGCTTACATTAAGTCTTAATAGTATATTTTCACCATAATAAAG
GGCAACCTAACATCATCTACTCAGGAAAAAAACTGCAATCACCATAAAACCTGCTTAGAGGAAT
AGGTAATTCCTAGGGAATGTATTAATCGTCAGAATGGAGAAATAATGGGTGTTTTGTACACTGA
C
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021