Detail information of Chr1_circ_ig.30


General Information
CircRNA Name Chr1_circ_ig.30
ID in PlantcircBase csa_circ_000130
Alias Chr1:3339523_3344185
Organism Cucumis sativus
Position chrChr1: 3339523-3344185  JBrowse»
Reference genome Cucumis sativus v1.5
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Chr1_circ_ig.29 Chr1_circ_ig.31
Support reads NA
Tissues leaf,root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGGATTCATTACACCAGGAATATATGAAAGCAAGAAGCACCAGAAGGACTGAAACTTCCTCGC
CCATCCTTTCCCTCCTCCATAGAGATCATTATGAAActgaagcccgagaagataccagaaagac
ccaacaatatgaccagccaacataaaggtcaaaagattgatgacaaaatttgcccatgctgtct
caaataca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAAGCCCGAGAAGATACCAGAAAGACCCAACAATATGACCAGCCAACATAAAGGTCAAAAGA
TTGATGACAAAATTTGCCCATGCTGTCTCAAATACAAAGCCACTTGGAGACTGGCCAGCGAGAA
GAGGTAGAAACCTATACAGTCTGGGAATATATTGAACAGTAACTGCAGTGCGTAATAGATTTTT
GGCATAATTTGCTCCAGATGATCCCAAAGACTTTGGCAGGATTAAAAAAATTATGATCTGAGAG
AGAGAGAGAGAGAGAGAGAGAGAAATCATTCACAAGTCACAACCATATTGGATATATGTCAAGG
ACATCTCTGAAATTTTAGAATTAATAAAACCAGGATATTCTACAAGAACTTGAGATTTCAGGAG
AAAGTTGGTTATCGTGGTAGTGCACAATATTTGGTGACCTCAAATTTTGAATTAACAATATAAC
ATTTGGATTAGTTCAGCATGTATTTATCTGCGTGAGCCAGGGGATAGGGGGCATACCTGAGGCA
GCGGCAAGACAACAAGCAAATCTATAAAAAAATTTCCTTTGAGGTAATTCATGGCAATTTTCTT
CGGATGGTCAACCAATTCGCCAGCACCAACGACTCTGGATTCTGGTGCTACATAGGCCAACCTA
AACTGCATGTGATTAAAAACATCAAATTTCTAGTTAGGCATTGATATAGAATACAAAAGATAGT
ACGAGATTGTTAACCTAGTTTGAATTTCTAATTTCTAATTTATCTTGTATCTAAATCGTACCTG
ATAGTTTCTTTATCCAGGGTTTCATTTTCATCCTCTTTTGTTCTTTTGTGCTGAACCAGATGAA
TTACTCACCTTGTCATGAACCTATTCTACTTTAGATGACTCTATGATGTCTAATCTCTATAGGA
GATTTGTTCGTAGAACTTTAGATAAGGTTGACATGTTATTCCCTTTTTTTAAAATGAAAATTGG
GAAAAGAAAAGCATATACCATCCTAAGAAGAAAAAAAGATAAGAGAATCATTTAACATTTTTTC
TAGATAGTAAATTGATCGACAAGGTTTAAATAACATTTTAGTCCCTTAAACTTTCAAGTTTGTT
CAATTTCAGTCTATAAACTTTCAGGGTTATTTCATTTTGGTATCTGATTTTTTAAATATCTATT
TCCTAAACTTACCAAAAGAAGGGGAATAAATAATCATTTTGATACTTTTTTATCTTACATTCTG
CCTTAAATCCAATTTGACCAATTTTCGTTTCTAACTTATTTGGTTTGTAACATACCAAGTCACT
CTACTTTACGGTACGGAATTGCGCTTGTGTTGTTCGATGAATTCTTTTTACAATGAAAATCAGA
CAAAAAAGAGTGAAAAGAGCAAGAGCTCTGCCAGCAAGCCAGGATCCTTTATAGGAGAGGGGCA
AGCGCTTCAACTCAGTCCCCCTATTATCCTAAACTCCTACTTCCGTCCGCAAGAATCAAAACTT
CTTATCAGAGTCCAAGATTCAAACAGTTGTTGCAATGACGGACTAAATCTAAAGCTCTTCTTCT
CTTCTTGTCTTTCCTCTTCTCTTCTCTCTCCTTCTTTCAGATAGTTAAAAAATATAAGTAGTTT
CTAAAACTCTTCTTCTTCTTCTCTGATCTTGACTAATTCATGGAAAATCAAACTTGAAGAATCA
AAGGGCTCGTGTATAGGGACAAACTTCCCACCAAGAAGAGATGCATGCACATCGGTCAGCTGGA
ACATCGGAAGAGTCTGGACTTGGTGGAAGAGTTGTTGAGTCAAGGTCGCCATAAGTGGCTCAAC
TTCTAGAGTGCATAGGGAGGGAAGCCGCCGCAACAGTTTAGGCTATTTCCGTTTCTGTTGTTTA
GGAAAGAATTATAAACAAGGAAGTAGCACCATCCACCATCTGGTGTTGGTTAACATTAAGGAGA
AAGGCTCAACAACCATAGGTCGAGCAACCTTCTTCCACGAAAGAATCGACTGGTCTCAAGACGC
CATCCCTTTTCACGCTAAAGCTAAAGAAGCCTAGTGAAAGATAGGAGGGCAGTTTATGAGTCCT
TGGACGTGACCTTATCATATTGCTTCCCCTTTGCTTCAGGTACATCTGAGTTAAATAACAGCCT
TTAAGATAAGGGATGGACGATCGCCCAAAAGTTCAATCCACTAAGGAAGAAAGGTATCCTCAAG
AGTACGCTCGCGCCTCTCCCTCTGGTCTTGCCTTTCTCCTCTCCCGCAACAAGAAAAGCAACGA
TAGATCGGGATGTGAAAAAGCATATGCTAACCCCACTTATCCAACTGCCTAATAAGCAACTTTT
TTTGTCTTGGGCTAGAGAGATAGCCACATACAAGAAGGGTGGAGCATCGGCTAGTCATTTGTTA
GGTTATGAAATATGCAAGACTATTAAGATGAAGAAAGCCTTCCCAAGGCTGGCTTCCTATGCCA
GATGCTCCTTTCTCCCGTACTTCTTTCTCAAAGACCCTACTCTATGGATAGCTTGAGGCTACTT
CTAAGAAATTGAGTCCAACACATATGTCTACTTTTCACGCTCACAATTGAAATGATCGAAAAAG
ACATATGACATATATGCTTGAAAGTTGAAAATATCATTAAAAAATAATTTAAAAGTCCCTCAAT
TTAATTATTTGAATTAATATCTAGGACTTGAATTTCTCCTTTCTGGTTTCAGAAGAATAAGAGG
TCGTACATAGAAATTATGTCTTCGGAGCTTGCGAGAGAGGACTGCTGCTTTCTCGTTTCTAGTT
TCAAGAGAATAGGAGGTCGTACATAGAAATTCTAACAGGAATAATGGCCAATTAAGTCATCATA
GAAGAAGAAGAAAGATAGACAAAGCAAGAACTACCAATATTTGTTGTTTCCTCTAAAAGGCATG
GAAGCGTGCACTGGAACAGAAAGAAGATGATCGAGACTACTAAAAATCCCTATCTACGAGATCC
CCTCTGAGATCGATAAACCTTTTGGATCTTATTAACCAAAGAGATACGACTTTGCACTATCGTT
AGTTCAACACCAATCTAAAATCCCCAAGGAATTCCAAGAATTCTTGTTATACGCTCGTTTCGCT
TCTTTGCTTTGTAGTCTCGCTTCTTCTCTTAATTGATAGAACTCTCCGATCAAACAACCCTACC
ACGGATGAGGCTTCAACTGTAGAGTAGCTCATCAAAAAAACCTTTCCCAAGTCGTCTTGCAATC
GGACGACTCCACCTCTCTTGTATTGTGTCTTGAATCCTCAAAATCGGTTGCCTTGCGGTAAAGC
CGTTTATATCGTTAGATAGCATTTCCAGAGGGAAAGAAGAGGTTAGAAGTGGCTTAGTTCAAGG
GATGGACCCACGATTATCGAGGTGCTCCTACCCAAGTAGACTAATGAATACCAACTGGAAGAAC
TCACTTTTCAAATCTCGCTGATATGATCAATAAGGCAATACAATATACGGGCTTTTGACTTTCA
ATCTCCCACATCACGTAAGAACCAAAATAGTTATTTTCTAAAATTTCAAGAATTAAATTGGACA
TTGTAGGAGTTTGAAACCTGAAAAAGAACAAATTTGAAAGTTCAAGGACCAAAATAAAATAAAC
TTAAAATGTCAAGACCAAAATAGAATTTAAACCATTCAATAATATACCCAAATGACATGGCTTC
TTGTCAACTTGAGCATAGTTTAAATAGTCAATGGCTAAAATGTTGGGTTTGAAAACTCAAGGAT
CCAAATGCAACCTAAGTCAAACATCAAGAACAGAGTGCAATTTTTCCTCCTCTGTTTCATGTTT
TTCTTTAATGTTTAATGTTTTCTGAATTAACCATCCATATATAATTGTTAAATTTTTAAGGTTA
AATTTACTATTTACATATGTTTGAGTTTGATTTCAGTTTGATCTTTGCCCCGGAAATATTTGTA
AGTATAGTACTGCGTATTGCTTCTAACTAGGTAATCAACAAACATAGGACTTTATCACATGGAA
TCCACCGTAAAATTTAGAGCTAGTTAAATTTTGGATGGTAGAAAAATGAACAGATACCTGAAGA
AGCATGTGTAGGAAATAGATAAAATCAGTCATGCTCCGGAAAACCACCAAGGTTGTGGTCAAAG
GCCAGTCAATAACAATGCACTTATTATTCTGCACAAGTTACGCAAACAAATTATTGTGACAAAA
TGGTAGATGCGACAGTTGAATCAACAAGATTTTTTTATTAAAAAAATGCCCATGGACTCCTTAA
GCATTGAATAACAGACGAGATTTATTAACGTCAAGGAAAGAAAGTAAATATTAGATTTTTTTTT
TTCAAAATGACAAACAGATGTGAGGGAGGGGTTTTTAACTCACTCGTGGACCTTGTTGAATCAC
TTGATTCAAATGGATGACTATAGTAAGATATAGCTTGGATTTAATCTAAGCAAAGATAGTTTTA
GATTTCAATGATTGGAGATAGATGATGAAGAAGAAGAAAACCACACCTCTTGAACAGACAGCAA
GAAGAAAAACAATGGGTCCAAGAAGATTGCCACCAAGCAAGATATGACAAAAAACTTATTCCAT
TGCTGAACAACTTTTGCATGAGGATTCATTACACCAGGAATATATGAAAGCAAGAAGCACCAGA
AGGACTGAAACTTCCTCGCCCATCCTTTCCCTCCTCCATAGAGATCATTATGAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.852871655
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhu et al., 2019