Detail information of Zm00001d031092_circ_g.1


General Information
CircRNA Name Zm00001d031092_circ_g.1
ID in PlantcircBase zma_circ_006680
Alias zma_circ_0000313
Organism Zea mays
Position chr1: 176871451-176874899  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d031092
Parent gene annotation Nuclear transcription factor Y subunit A-10
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d031092_T002:4
Zm00001d031092_T003:4
Zm00001d031092_T001:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGAAGCTCATCATCGTGCTGCTGCTGGTGTTGTTGCTGGCGGAAGTGGGGGCGTCTGACGTTG
ACGAGGGAAGCACCTAACCGAACCACCAGGCACCAGcttcctgcctttgaccagcctattttcc
ctctctgctttggcacgggcacagcgccgacgcatgatggcgtcatattgcttagcgttcacat
aaattggt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 683
Transcript exons: 176871451-176871594,176872368-176872436,176872586-176872
686,176874531-176874899
CTTCCTGCCTTTGACCAGCCTATTTTCCCTCTCTGCTTTGGCACGGGCACAGCGCCGACGCATG
ATGGCGTCATATTGCTTAGCGTTCACATAAATTGGTGCTTCTGTTGGCCTATTCAGTGGTATAA
GCAGACGACCTCCAGGCGTTGCACCCACTGGATAAGGAGAAAGCAGGCCATAGTGTTGATCAGC
ATAAGAATTATCAGCGGAAATCATTGATTGACCAAGGCCCAGCTCAAAATGAGCATTGTATATT
GCAAATGGTGATTGCAAAGCAATAGTGGCAGAGTGATCAGATCCTTTCTTCCCTTTACCTTGAG
GATCCACGGAGAGGTTGAGGAGCTCAGGGATCCCCCTCTCCGGCAGCGGAGGCGGCTGCTGGGG
TGCCAGTACAGGAGCCTTGACCGACGGCACGGGAGGTCCCTGGGGGGCCTGGATGCGGCCGTCC
CGGCAGTGGGCCTCCGGCGACAGGGCCAGCGGCTCGCCGCTCAGCATCGGGGCCGGCCCTGCCC
ACCACGGCAGCGGCGCTCCGCTGGCCGCGGCGGCGGCGTGGCCGAAGCCGAAGCCCTCGTGGCT
GCTGCTCCTGAAGCTCATCATCGTGCTGCTGCTGGTGTTGTTGCTGGCGGAAGTGGGGGCGTCT
GACGTTGACGAGGGAAGCACCTAACCGAACCACCAGGCACCAG

Genomic sequence CTTCCTGCCTTTGACCAGCCTATTTTCCCTCTCTGCTTTGGCACGGGCACAGCGCCGACGCATG
ATGGCGTCATATTGCTTAGCGTTCACATAAATTGGTGCTTCTGTTGGCCTATTCAGTGGTATAA
GCAGACGACCTCCAGGCTGCATCCACAAACATATGTGCTGGAAGATAAGCAATAAGATCTACTC
ATAAACAATCTAAAGATTTCCAACTTGAAAAGGGAAGCATCAAATAAAGGTATCTCCTTTCTTA
TATGTCCTCATTAATTCGAATAAAATCCATGGAAAAGATATTGCTTCAGCATAGCATTTATAAA
GAAACCTCACCAGATTATAGCTACATTATATCTGGTAATTTAATGGTAGACATTTATTCACTGG
GTTACATAGTATCCCTTTTATTTTTTTCATGGTATAATATCCCTTTCTACATCCTCATTAATTA
TAATGCATCCATGGAAAAGATATGGCTTCAGCCGTGCATTTATAAAGAAAATCTCGCCAGATTA
TAGCTATGTTGTATCTGTTCATTTAATGATAGACATTTATTCACTAGGTTACATTGTATCCTTT
TTCATGGTAGAATACTATATTAGCTAATCACTTTTATTTATTTATGAAATAGATAGGCACAAAA
AGGTAGTTCACTGCTCATTTAAGGTAAAGATGAATTTTATGTTCATTAAACAACTCACATGACA
TTCAAAACAGTTTGAGAAAGAGAAAGAGAAAGAAAAACTGAAAAGAACTATCACATAAATCGCT
GAAAATGTGGAATTGACCACTGAAATAAGTTCTCCTTTTTACATATATGTACTGCCATATTAGT
ATTCTCATATATATTAGTATACTACCACAGCAACAAAATCAGCCAACAAATTTAACACGTCTGA
CCCAAAACCAACAGAACATACCGTTGCACCCACTGGATAAGGAGAAAGCAGGCCATAGTGTTGA
TCAGCATAAGAATTATCAGCGGAAATCTAACACCACAGAAAATCAGTCACCAGTCAAAAGCTGA
GAGTGAAGATGCATTTTGAATCGTGAAGACAGGCGAAAGTGCACAGAAATTTTAATCACAAATA
GGTTATCTCAAATCATTTGTATAAAAAAAGTAAATGGACAATCATACCATTGATTGACCAAGGC
CCAGCTCAAAATGAGCATTGTATATTGCAAATGGTGATTGCAAAGCAATAGTGGCAGAGTGATC
AGATCCTTTCTTCCCTTTACCTAAAGCCAAATGCCACAAAACATGAAAGCAATCAGGAATGGTC
CTTGTATGCTAAAAGGAAAGTAAAGTACGCATGCACCAACATTCAAGTTTCCATAGCCTAGAAT
CATCTGTTCAAGCAAAACTAATAGTCCCAATAACTAAGAAAAGGCATCTATGTAGTATCAACAA
CAACAATTAAATGACAGTACATATGAAAAAACATTATCCCTGAGTCCATGTACTGATAACATTG
TAAATTGCGGTGTCTAATTAGAAATACTAGGGGCAGTTTGGATACTACCCAATATGAGTCTCAC
TAAATTTTGGTGTCAGTGTTATAAAAAAATTGGACAGCGCCAACACGCTAACATTCCAACAAAA
AAGCAGTTGTTTGGGTTGTGACCCTGCCAATTTGTTGCCACTGACAAAACATGGGACGGAAACA
AGAATGACCTTGCTAAAATTGTTAGTATGGCACATTTGTTTTTTTTTGGGGGGGGGGGTACCTA
AATGAGGTCTTATTTTGAGGATTCAACTGCAATGTTTGGATTGCAACCTTACCATTTACCAACA
CTCACTAGTATTGTTTGTATGACACACACCATTCTTTTGTGTGGGGGTGGGGGTTGTCAAAGTA
TAGCTACATGATGTCTTGGTCTGTGGATTCAACTGCAGGAATATTATGATGTAAATTTATTGCA
AACCAGATAGACTCTAGGGTTTAAAAACATTTGAAGTTTGTTAAAGCAAATAATCCAGCCAGCA
GAAACATGCCACATCAGCCAAGGGTGCTACAAAATATTTGGTATGGTTTGCATAAGAACCAAAC
CAAATATGTCCAAGTGTAGAAGTATCTTTTACATGTGTGTGTGTGTGTGTCCTTGTTTGGTTGC
AGAGCAAACCCATGATTCAGCAGGTTATAGTTATTTCTAGAGTCACACCAGCTCAGAATGAGTT
AAGACCCTGTTTGAATGCATCATAGCTAATAGTTAGCTGCTAAAATTAGCTAAAGACATCCAAA
CGGTCTAGCTAATAGTTCAGGTATTAACCACTTTTAGCAAATTAGCTAATAGTTAGCTAGCTAT
TTGTTAACCATCTAATTCCACTAGCAGTTTTTAGCCACATAACTATTAGCTCTAGTGCATCCAA
ACACCCCCTGTGGAGTAAATCTAAAAATGCAGCATACCATGATTATTGGGGAAGAATAGTACAT
GGCTCTTTTCCCATTCTAGCAACCACCAAGTCAAAATTAGAAACAAGCAGGAAGTATCCACCCA
TGTACTCGGTCCCATAAATAGATGAAACCGTGAAAACTTTTTGTGTGTGGCATGATGGATGCTA
CCATGTCCAGGGAGTATCCACCCATGTACTCGGTCCCATAAATAGATGGAACCATGAAAACTGT
GTTTGGCATGATGGATGCTACCATACCATGTCCCCCTCTTGCTTGTCCTAGCCTCCCTAGAAAG
GCAGTGTGGCCAAGTGCCATGAGAACATGGCATAAAGGCTGGGATGTGGTGTGGATAAGAACAT
GGCACACTCATACAAAACCTGCTTTCAGTCATGTCAGCTACAGCCTACAGATAACCTTTGTTGA
ACATGAATGAGCACAGAAGTGTGCCTCATGTGCTTCATGGATTTATGAGCAAAAAAAAACTGGT
TGTAAACAATTTTTTTAGCATCTAACCGTCCCTAGCTGTGAGACAAGGAGAGCAAAACAAAAAC
TGCCAGATTCTTACTCGAAGATCTAAATCACTGCAATCTGAATCTTAATGGTGTGTTCCTCACA
CACGTCGAGATTAAACTTGCACAATTTTACTTGCAAGCAGACACAGGCAGAAGCGTATCCTGAG
TTCCTGACCTTGAGGATCCACGGAGAGGTTGAGGAGCTCAGGGATCCCCCTCTCCGGCAGCGGA
GGCGGCTGCTGGGGTGCCAGTACAGGAGCCTTGACCGACGGCACGGGAGGTCCCTGGGGGGCCT
GGATGCGGCCGTCCCGGCAGTGGGCCTCCGGCGACAGGGCCAGCGGCTCGCCGCTCAGCATCGG
GGCCGGCCCTGCCCACCACGGCAGCGGCGCTCCGCTGGCCGCGGCGGCGGCGTGGCCGAAGCCG
AAGCCCTCGTGGCTGCTGCTCCTGAAGCTCATCATCGTGCTGCTGCTGGTGTTGTTGCTGGCGG
AAGTGGGGGCGTCTGACGTTGACGAGGGAAGCACCTAACCGAACCACCAGGCACCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.057981438
Functional Information
Coding potential Y
Potential coding position 176871526-176874562(-)
176874815-176874812(-)
Potential amino acid sequence MTPSCVGAVPVPKQRGKIGWSKAGSWCLVVRLGASLVNVRRPHFRQQQHQQQHDDELQEQQPRG
LRLRPRRRRGQRSAAAVVGRAGPDAERRAAGPVAGGPLPGRPHPGPPGTSRAVGQGSCTGTPAA
ASAAGEGDP*(-)
MMSFRSSSHEGFGFGHAAAAASGAPLPWWAGPAPMLSGEPLALSPEAHCRDGRIQAPQGPPVPS
VKAPVLAPQQPPPLPERGIPELLNLSVDPQGKGKKGSDHSATIALQSPFAIYNAHFELGLGQSM
ISADNSYADQHYGLLSPYPVGATPGGRLLIPLNRPTEAPIYVNAKQYDAIMRRRCARAKAEREN
RLVKGRKLVPGGSVRCFPRQRQTPPLPPATTPAAAR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b