Detail information of Solyc05g007030.2_circ_g.1


General Information
CircRNA Name Solyc05g007030.2_circ_g.1
ID in PlantcircBase sly_circ_001620
Alias NA
Organism Solanum lycopersicum
Position chr5: 1621527-1626108  JBrowse»
Reference genome SL2.50.38
Type   ue-circRNA
Identification method CIRI; find_circ
Parent gene Solyc05g007030.2
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AA
Number of exons covered Solyc05g007030.2.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACTGAGACAAATATTCTGCATTGGCAGGTGTGACATATGTTCCTGAGCATTCTCTGAAGATCA
ATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGgattgggaacgcttttcatttcaaaggt
cagtgaagagtgaaaagatcgggagtgaaggacttttatcttttagaggtgtatctcttgagcc
agaaagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTGGGAACGCTTTTCATTTCAAAGGTCAGTGAAGAGTGAAAAGATCGGGAGTGAAGGACTTT
TATCTTTTAGAGGTGTATCTCTTGAGCCAGAAAGATTCTCGGTTCGTTGTGGTTTAGAAGGTAT
TTTCATCCCTGGAAGAAGATGGAGGAGGAAAATTGAAATAATTCAACCAGTAGAAATTACTTCT
TTTGCTGCTGACTGCAATACAGATGATCTCCTTTGTGTCCACATCAAGGTGGGTTTTATTCATT
AGCTTGAGTAACTAGCTAAATTGGATATGTGTATGTTGCTAGGAATTTAATGTTCCTTATGGCT
TGGGTATATCGAGACGATTAACATGAAATCAGCATTCTTTTGCAGAATGTCTGTCCAACACATG
CACCTGATATTGTTGTCTACATAGATGCCGTAACAATCATTTTTGAAGAAGCTTCAAAAAGTGG
GCCTCCTTTATCATTACCAATTGCATGTATTGAAGCTGGTGAAGACTATAGTTTGCCAAATTTG
GCCCTCAGGTTTAATTCGGTTTAACTTCTTATCTTTACTTAGTAAATGATTTATCTTCTTTATC
AAATCATTATGAATAGTGCTAGTGTATTGACTCACAACAGACATCATTTTGGGGGCCTGGTGTA
TGTAAATTTGTATTTAATGATTGAAGTTACCCTAATCTGCATTTGTTTTAGAGGCTGTTCTTCT
TTTAACCAAGAGTATGGAACATATATTGGCCATCAGCAGAAATAGAAGCATTCCTTCCATTGAG
GCAGGTCTTATTAATAAGATATCTGCATAGAGTTTACTTGCTGCTATTGCATTGCAGCAAGTAT
CAGTGATCAAGCTGAATATTTTTGAGATTCTGAGGAAATTCTTAATATCTTAATACTTTTTTCC
AAGTATGTTTAAAGGAAGGCTACCAATCACCAGTTAGGTGTTTCTTTAATTAATAGCGTGTTTG
ACCAAGCTTCTTGGAGGCGGAGAACACTTTTTCTGAGATTTGAGCTTGCCAACTAAAAAAGTGC
TTTTTCTTGGCCAACTAAAAGAAGTGCTTTTGAACAACTTAACCAACTTTTTTGTTGTTGGGAT
AGTTTTGTTAATTGTTGGGAATAAGCTACAAAATTTCAGCTTTTCCCAATAAGCTAAAGTAGAA
AAACCAAAGGTATAGCATAGTTGTCAATGAAGTAGGTTGATAACCATGAGGTCTCAAGTTCAAA
TTTCAACAAAGACAAATAGACTAAGTGATTTCTTCCCTAGCCTTGGTGGACAGAGTTACCTGGT
ATTATTGCCGTTGAGAGATAGAAGGTATCTCGTGGAATAAGTCGAGGTGAATGAAATCTGGCTT
GGACACCACGGTTATAAAATAAAAAAAGAAAAGAAAGAAACTAAAGTAGAAAATAAATTGTTTC
ATGGAAAAAATATACATCTACGCCTCAGTCCCAAACAAGTTGGTTGGCTATATGAATCTGCATA
TCTTCACTTAAGCTCGACCATACTAAATAGAATAAAAATTGAAAAAGTTTACAACTCTTATTAT
TATTAGAAGTTCTCTAGTAAATCTAATACCTATCCTTAACTAGTAGCTATCACATATATGGATC
TTTTTCTTCCCTTGTGCCTGTCTTTAGCTAAGTTGGCATTGATACCAAGATTAATAGGTCTTTG
GAGACAACTTTCTTGCATTTATACTTCACCCCCTTTAAACACCTTCACTAACCAGTGTTTTACA
CCTTCTGACTAGTGCATCTGTAGGTCAACGCAATACACCCATACATCTCAAGCGACCTTCTTGC
ATTTTATCCTTAATGTGTGCTACTTGCACCTTCTGGCAGATGTGGTCATTTCTAGTCTTATCTT
ATCTGACATGATTACATATCCATCTTAGCATTCGCTTCTCTACAATTCATCTTGTGGATATTTT
GTATTTTAGCAGCCCAACATTCACTGCCATATAGCATTTTGGTCTTATAGCTATTATGTAGAAC
TTGCCTTTCACTTTGGTCGGCTCTATATTATGAGGATTCATCATGAATTGAACTGGTTGACTGT
CAGCCTACCACAACCCTCTTCCTTTCACGGGCTTGGTACCAACAATGTTAGCAAGTTCACGCAG
GGGAAGATTTTCAAGGAAAAATATCCTTCTTATAAATTTGTTTTTACCAAACCATCCCTCATTA
ATTTAACACATCTATCTTTCAAAATTATACAGAAGCTTTTCTCCTTTTTTGGTTTCTTCCTGTC
CTTTTCCCCCCTTATCTCTCTGCTCCTCCTCTTCCTCTTTGGAATAATCTATCAACTATAAATA
TGAGTCATTTCTCTCTTTATTAATTTAATTAAACAAATATAAATTAATTTAGGTCTTTCATAAT
AAATAATTAAAATAATTTCTCTGTTTTAAGTAATTCTAATTGTAAAATGAACCTTGCTACTTTT
TTTTTATACTTAAAAACACTTTAAAAATATGGCTATACACAAAATTCTTATCAAATACTGGGGA
AAAAATACTTCTCAGACGAATTGGTTAAACACAAACACCTTTTTCCAAAACTAGTTCTTTGAAA
GCTATTTAGCCAGAAGTGCTAAAAATAAGCATTTTTTGGCAGTTTGGCCGTACAGGCTTAAGGC
TATTATTTTTATTGCTAGCTTCGAAAGTCAAAACCAGTGTCGGCCTAACTTTTTGTTGTAATTG
TTATAATTGCTGGATTGCAAGTGCGAAGAAATTAACTGCAATATCCCTTTGCAGGAGAGGTGAA
GAACATTCTTTCATTCTCAGACCAGTCAATCCCATCTTGAAGAGTTCCAACGGTCATAGTGGAA
AAACTTTTCGATCTTCACGAGTACATTCTAGAAGTGCATCATCATCATGGCACCATCTTCCCAT
TATTGAGGAAAGAAATATTGGGTCACCTACTGATAAATATGCAGTTCTGGTATCATGTCGATGC
AATTACACTGGTAGGTACTGTTTAAAAAGAAATTCCTTCTAGGTACATGTATCTGAAAACTATT
ATGGGGTCTTACACTTTTTAAGTTCTTGGATCTTCTATGGATACTTGTAGAATCAAAGTTGTTC
TTCAAACAGCCAACGAGTTGGAGACCACGAATTTCTAGGGACCTTATGATCTCTGTTGCTTCTG
AAATGACACAGCAAACCCTTGGATCTTTTGAAGGAGGTGCTCAGCTTCCAGTACAGGTTGTACA
TGATATGAGAATAATGTTAACTTATCATGCTGAAGGTTTAAACATCTTGAATGCTTATCTTATG
TTCAATTTGTCAGGTCTTAACTCTTCAGGCATCAAACCTGACTTCACAAGATCTGACAATGACA
GTGCTTGCTCCTGCTTCCTTTACTTCCCCACCTTCTGTGGTGTCATTGAGTACTTCACCGACAT
CACCAATGAGTCCCTTCATTGGTTCTTCTGATTTTACGGAGAGAGTGAGTATTGATAAGCAAAT
TAGTGCTGCTCCGAGCAATAGCTCGGTATCAGTAAATCAAGTACCGGAAGGGAAAAATCTTTCT
CAATCAGTTTCATTTAGTGAGAGAGCCACTCCCATACCTGATGTGCTTCCAAGTGGCGATTCAG
GTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGGGTAATCATTTATTTGTAAATTATC
TTTATTTCGCAGTTCGGGTTTAATCTTACACCCCTTTGTGGTGGTTTCAGATGTGTGCCCGCTC
AATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTC
TTTACAGATTGATGTAAAGGAGAAAGGTATTAGCTGAGTTCAAATTGTTAAACTCGTTTCTTGC
CACTTTCGTTATTTAAATATCCACTTGAGATGGCGGCAATGATACGACATCAACCCCTGCCTTA
GTTCCTTAAGCATATTTCACTTTTATATCAGAAATACTAGAACTTTTCATAAATATCATATTTT
CCTTGGTTCCTTTCCCGCTCTTGAATTATTACTCAAAAATTAGTGCAAGGTATTACGCGCCTTG
ACAGTTGTGTCGGATTTATTTGAATTGAAAGAACAGAGATGAGATCAGTTAAGAGGAAAATAAA
GTATGGAAAGAAAGGAGAAGACCCTATTTGGTTGGATGAAAATTAGAACTTATCGAGCTACGGT
TTTACCCCAATTTCTGGTGGGTAAAATACTTAAAACTTCTGTGGCTTCAGTAATTATCTTAATC
CATCTCTTTCATTCTTCTATTTACACCTTTTTTGTCGGGTAGACTGCAAAAAGCAGAGTAAGCT
GTTGATATAATTAGATTTGATGCAGTTTGTGTTATCTTTTATGAACTATGGTGCATTTACGAAC
TAATTGAGTAATTTACGAGCAGAGTACAAGTGATCCTCTCCTATGGTGCTTGTGTCGTCTGTAG
TTTTTGTATGTGCTACTATCTGTTTGAGTCTAGAACAAGTTAAACGTCAATATCGTAAGATGAA
TTAACTGAGACAAATATTCTGCATTGGCAGGTGTGACATATGTTCCTGAGCATTCTCTGAAGAT
CAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.14101453
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020