Detail information of Csa1G699620_circ_g.1


General Information
CircRNA Name Csa1G699620_circ_g.1
ID in PlantcircBase csa_circ_000725
Alias Chr1:28137040_28140176
Organism Cucumis sativus
Position chrChr1: 28137040-28140176  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa1G699620
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa1G699620.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCATGTCATTCTTGTTTCAGTATAGAGTTTGATCGTGATGACGAGTTCTTTGCAACTGCTGGT
GTCTCACGTTGTATCAAGGTTTTTGAGTTTAGCTCGatacaagctgatcttcactacattaagg
aagacattagctctgtggagaagcagagattggaactatataggtctaaagaaaggtattcggg
aaaaatga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 660
Transcript exons: 28137040-28137396,28139345-28139502,28139605-28139670,28
140098-28140176
ATACAAGCTGATCTTCACTACATTAAGGAAGACATTAGCTCTGTGGAGAAGCAGAGATTGGAAC
TATATAGGTCTAAAGAAAGGTATTCGGGAAAAATGAAAATGCTCGCCGATGACACCGTATCCAC
AAAATCACGGTCTTCCTTAATCGACAAGCATGGAAATGGAATTAATAGTGGCGCCCAACGGTCA
CAAGGCTGGATGAGTTCTGGGAATTCCCCCAATCCTAGAGCAGATGCAAAGATACAATTAAGCT
CCCAGGGACCACTTAGAAAAGATGCTTATTGTAGTTCAGATTTGCATTCTGTTGCACAATCTGG
ACTAACTGTAGCAAATAAAAGGAGGGTTCATACACAGTTTAATGAATTGCAAGATTGCTATCTG
CAAAAACGACGAAATTGGAGGAAACAATTGTATAAACAAGAAGATAGGGACATAAAGTTTAGTG
GCGGAGAAAGTTATAATCCATCTCTTGAAGATTTTCAATCTGTGCTAACTTCTTTTATGCGATA
CAGCCGATTGAGGGTCATTGCGGAACTTCCACACGGCGATCTTTTTCATTCACCAAATATTGTA
TCGAGTATAGAGTTTGATCGTGATGACGAGTTCTTTGCAACTGCTGGTGTCTCACGTTGTATCA
AGGTTTTTGAGTTTAGCTCG

Genomic sequence ATACAAGCTGATCTTCACTACATTAAGGAAGACATTAGCTCTGTGGAGAAGCAGAGATTGGAAC
TATATAGGTCTAAAGAAAGGTATTCGGGAAAAATGAAAATGCTCGCCGATGACACCGTATCCAC
AAAATCACGGTCTTCCTTAATCGACAAGCATGGAAATGGAATTAATAGTGGCGCCCAACGGTCA
CAAGGCTGGATGAGTTCTGGGAATTCCCCCAATCCTAGAGCAGATGCAAAGATACAATTAAGCT
CCCAGGGACCACTTAGAAAAGATGCTTATTGTAGTTCAGATTTGCATTCTGTTGCACAATCTGG
ACTAACTGTAGCAAATAAAAGGAGGGTTCATACACAGGTAAAACTTTTATTTCAATTTAAATTT
CACTTTACAGAAAAGTTATCACAATGGTGCTAATCACAGTCTGGCTTATTAGTCAGCAAAATTG
CAATGATGGAGATTTAATTAGTATACTCTGAAACAACAATCGAGGTTATTGTGAAGATTGTAGA
TATTTGCTTCTTGGTTCTAGTGATGTTACTTTTACAAATATCATTATGACTCTCAAGCTCTTAA
GTAATCATCTTTCTATTCCATATTTTAACCAATGAATACAGTGATACTCTAGTTTTTGATTGCA
TACACTTAAAAATTATGTTTGTCTTTCATTTTTCCGCACTTATATAGTAAGAGGCCTCGTTGCT
ATTTGCCTCCTTACTGGATTTTATGAACAATGTACTGGTGAAACTCTGGAGTCTGGATTGTTAT
TTCTTCATTATGGTTTTGGTATGTCCATGTGGAATAAACTCCTTTTTGAAACTTTAAGTTCAAT
CTTCTTTCCCTAAAGTCGAGTCTTCTTTTTGTTAGATTTTGGCCTAGGACTCCTGAAAACAGCA
TTCCTTTTAAGGATATGTCCAATTTCAGCTATTTTGTAGGTATTATGGATTTAGCAGGATAGAA
ATATTTGGGAGTTGTAATAATGCTTAGGCCAAAGTCTCGGTTTCTTACCAATAAACAAGAAAAT
AGCTTAAGCTGAAGTGGGCAGTTAGCTTTTTTGTTTCTATCTTTTCCTGGTACGAGGAATTGAC
AGTCTGTTCTGCTTCTGTTGAAAGCTTCTGTTGGAGATCTTGTATTGTTGATTCTCTTTCTGTT
GCTTAACCTATTTATTAATATTTGTGATATGAAAACCCAACTAATTGGAATTGAAAACCCTTTT
GGGATGAGAAATCACTAAAACCCCCCAAATTAACTCGATTTCAACCTTAAGGACTGGGTTAGAC
ATTGATTGCCTTAAAGATCAAATATCTTAAGACAAATAACACATTTCTCAATCCAAGATTCGAA
TACTCCACCAGATAAGATGATCAGTCTCATTTAAATGTTCTTGGAATGCAACTCAATACATGAG
TTACAAAATTTAAGAAGCTCTGCTGGCTAAACTTGAAAGAAACACAAATAATCTCTCTCCAAAC
AACCTAATAGCAAGGCTGAAATGGCCTCCTATCATAGTGAAAAGATAAAATCCCTTACTTAATA
AGTCAAAAAAAGGATATAATTGGAAAAATATTAAAATTATATCAAAATTGTTAAATTAAAATTT
ATTTAATAATTTGATGCTTGAGTGGTTCATATCAATTTGTTATCTGTTTTACGTTTCTATAAAC
AAAATATGTATTACTTTTGAATTTTGATTAAAGGATAAAATGAAGATTAAGGCATTTAATTTCT
CTTTTTTTTTTTTTGAGAAAAAGAGAGGGATTAGGAAAATAATTTGTCACCTAAAGCAATGAGT
GAGCAGGTCAGGACTTTTTGTACAATAAGGAAAGTTCGGTCAGCCTATCAGAAAAGAGCTCTTC
CTAGTTTGCTCATGTCAACATCTAGTTTGGAGGAGCTGTACATTAATTTGTTTTCTTTTTCTTT
CATATTGATTTATTTTGTGAAATTAGGAAACTTTTAGCTTGTCTGTGCTGATTAAATCCATCTA
CTGATGTTATTTTGTCAACTGTTCTTAAGTTAAAGTGCAGTCAGCCGATTAGAAAAGAGTTCTT
CCTTGTTTGCTTAAGTTATGTCAACATCTTTCAAAACTTAATGGTCATTTAGTTGGGGGAGCTG
TACATTAATTTATTTTCTATTTCTTTGATATTGATTTTTTTTGTGAAATTAGGCAAATTTTAGC
TTGTCTGCGCTGATTAAATCCATCTAGTGATGTTATTTTGTCAACCTTTCTTAAGTTAAGAAAT
AGCGTTGTTAACGTGAAATGGAATGCCTACAATTATTGACATTCAATTTTTATCCTTTTCTATA
GTTTAATGAATTGCAAGATTGCTATCTGCAAAAACGACGAAATTGGAGGAAACAATTGTATAAA
CAAGAAGATAGGGACATAAAGTTTAGTGGCGGAGAAAGTTATAATCCATCTCTTGAAGATTTTC
AATCTGTGCTAACTTCTTTTATGCGATACAGGTACAATTTTTATTTACTTATTTTAATTATTTG
GCATTGGTTCTCTCGTGAGTGTTAGCTGACATAATTTACTTCTGTCTTATCACATGGCTTATGG
ATTAGCCGATTGAGGGTCATTGCGGAACTTCCACACGGCGATCTTTTTCATTCACCAAATATTG
TATCGAGGTGAGGGATTGATATTACATTATACATTCCTTTGGTTGGGAGTTCTGCTGGGGCAGT
TATTTTACTTGATCATTCTATTTATTCAATCATAATGCACTTTAATTTTGATAAATCATGGTAC
AATTTAGCCTATAGTAGATATCTGGTTTAAGTTAAAAAATAAGTTTAGTTGAATTTGTAGTTAC
TTTTTGTCCTAAGCTACCTGAAACCTTTTGTCAACAATGTCAAGGATGTCCCCAATTGTTACAG
ATTTTGAATTAATGAGATTCTTTTGACTGACATTTATTTTTATAAATTACTTTGAGCCTTCTCC
AATCACCATTTTGTCTTTCACTGAGAGTCTGAGATAAATACATGTCCATTATTTTTAGGATTTG
TCCTCAGTTGTAAAATTTCAGAAATGATAATCATGTCATTCTTGTTTCAGTATAGAGTTTGATC
GTGATGACGAGTTCTTTGCAACTGCTGGTGTCTCACGTTGTATCAAGGTTTTTGAGTTTAGCTC
G
Conservation Information
Conserved circRNAs NA
PMCS 0.46943667
Functional Information
Coding potential Y
Potential coding position 28137137-28140173(+)
28140116-28137136(+)
Potential amino acid sequence MKMLADDTVSTKSRSSLIDKHGNGINSGAQRSQGWMSSGNSPNPRADAKIQLSSQGPLRKDAYC
SSDLHSVAQSGLTVANKRRVHTQFNELQDCYLQKRRNWRKQLYKQEDRDIKFSGGESYNPSLED
FQSVLTSFMRYSRLRVIAELPHGDLFHSPNIVSSIEFDRDDEFFATAGVSRCIKVFEFSSIQAD
LHYIKEDISSVEKQRLELYRSKERYSGKMKMLADDTVSTKSRSSLIDKHGNGINSGAQRSQGWM
SSGNSPNPRADAKIQLSSQGPLRKDAYCSSDLHSVAQSGLTVANKRRVHTQFNELQDCYLQKRR
NWRKQLYKQEDRDIKFSGGESYNPSLEDFQSVLTSFMRYSRLRVIAELPHGDLFHSPNIVSSIE
FDRDDEFFATAGVSRCIKVFEFSSIQADLHYIKEDISSVEKQRLELYRSKERYSGKMKMLADDT
VSTKSRSSLIDKHGNGINSGAQRSQGWMSSGNSPNPRADAKIQLSSQGPLRKDAYCSSDLHSVA
QSGLTVANKRRVHTQFNELQDCYLQKRRNWRKQLYKQEDRDIKFSGGESYNPSLEDFQSVLTSF
MRYSRLRVIAELPHGDLFHSPNIVSSIEFDRDDEFFATAGVSRCIKVFEFSSIQADLHYIKEDI
SSVEKQRLELYRSKERYSGKMKMLADDTVSTKSRSSLIDKHGNGINSGAQRSQGWMSSGNSPNP
RADAKIQLSSQGPLRKDAYCSSDLHSVAQSGLTVANKRRVHTQFNELQDCYLQKRRNWRKQLYK
QEDRDIKFSGGESYNPSLEDFQSVLTSFMRYSRLRVIAELPHGDLFHSPNIVSSIEFDRDDEFF
ATAGVSRCIKVFEFSS
MTSSLQLLVSHVVSRFLSLARYKLIFTTLRKTLALWRSRDWNYIGLKKGIREK*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019