Plant Circular RNA Database

Detail information of CSA023468_g_circ1

			
						 General Information
					
						CircRNA Name
						CSA023468_g_circ1
					
						ID in PlantcircBase
						csi_circ_002469
					
						Alias
						Cs-circRNA972
					
						Organism
						
							Camellia sinensis						
					
						Position
						
							chrSc0004580: 63347-66839  JBrowse»						
					
						Reference genome
						
							v1						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI2
					
						Parent gene
						
							CSA023468						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							CSA023468_g_circ2 						
					
						Support reads
						NA
					
						Tissues
						bud, leaf
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-CT							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						CSA023468.1:9

General Information
CircRNA Name	CSA023468_g_circ1
ID in PlantcircBase	csi_circ_002469
Alias	Cs-circRNA972
Organism	Camellia sinensis
Position	chrSc0004580: 63347-66839 JBrowse»
Reference genome	v1
Type	e-circRNA
Identification method	CIRCexplorer, CIRI2
Parent gene	CSA023468
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	CSA023468_g_circ2
Support reads	NA
Tissues	bud, leaf
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-CT The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	CSA023468.1:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAATATCCTGCTTAAGCTGCCCCAATTCAGATTTGTCATGAGCAAGCTTGGCATCATTTTTCTG
CTGCTCAGCAACAAGTTCTGTAATTTTCTGGTCTATcccaacagcagttctgtactgaggatcc
aatgctgcatctatctcatcaaaaagataaaatggagcagggtcacatcgctgtatagcaaaga
tcagtgtc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCCAACAGCAGTTCTGTACTGAGGATCCAATGCTGCATCTATCTCATCAAAAAGATAAAATGGA
GCAGGGTCACATCGCTGTATAGCAAAGATCAGTGTCAATGCAACCACAGTTTTCTGACCCCCAG
ACAACTGCTTCATCGATTGTGTCTCCCCTTGCCCAGTAAAAGAAACCTGCATATCAAGCCCAAC
AAAGGAAACACTGAATCAGATTTGCTCAATGAACTAGAATAATAGGGCAACCTAATTTCAAAAT
TAAGAAAATTCATTTAGCCTGCTTTGCAATCAGAATCCAACAAAAAGAGACCATGGCGTTGGCT
GTTGCCACAATCCATTTAAGGAATTTTGCATGCTTTATAACACCAGCCACATATGATTTTGCTT
ACTAGAAGGAACACAAATCTTTCTAAATGAGACTACATGCCTTGACTTTCACACCAATATATTT
CTCCACCCTTCCCTCCATGTCAGGTGCACGAGGGGCATCATCATCCTCATCATCATCACCATGA
TTACCATCCTGTAAAATGAAACCAAAACCCATTTAGGAAGTAGGTTTTAAGCCAGCAACTAAGA
TGAAAGAAAGCTGTTTAGGAGTCTAGAAGTTGAGAAGCAACCTAGTATTTAAATGACAGACAAG
CAGATTGGCCAATACAGTGAACAAGACTGTGTTTTGAAAAGTAAATACAAATAACAAACCTTCT
TCTTCATCATAACCAAAAATCCATGGCCACCTTGCACAAGCTCAGAAAATACTTCTCGAAAATG
CTTAGCCACGCCTTTGAACGTACGTTCTATGGACTCATCCTTCCGTAGATCCAAAACAGATATA
AGTTCTCTAATTTTCTGCCAAAATCAATACCCAACCAAGCTGAACATATCAGAACTGGCTTAAG
CTTGTACCACTAACTATAACTTCAAAATAAGATATCTGAATGATTAGAATTCAATTCAAGTACC
TCATCGCCTGCATCCAATTCAGCTTGCCTTTTCTGGAGCTCTTCTCGCTGTTCCGTGAAGTTCA
CATATTGATCAAGTGCTTTCTTGTTTACATGGCTGAACTGCTGTAGCTGCTCATTGCACCGGTG
AAGCATTTTATGCAATTCTTTTATGCTCCTCCTTTTGTACCTGTAGTTCACAGAGAGAGAAAAC
AAATATATTCATAAAAGTGTAAGTGATAGCATGCAAATATGGGTCAATCACCTCTATGTAAACT
ACTAAAGGGCCAACAACAGAAACACCATATTCAGATATTGTCAAACAAACCAACTTCTACATGG
ACTTCTGCAAAGAATCATATAAGGTTTTTTCTATCCTGACTCAATTTAATTTAGATATATTCAA
AGCTGTTAGAAGTGTAAAGAAACAATGGAGGCCCTGGAAACAAATTACTATTCATAAAATTAAT
GCAAGTGAACCGCATTCTCAGGGTTGAGCACAGCTCCTTGATCATTGGCATTAGATAATAGTTT
TTAGATTTTTACTAATCAATTACAGGCTACCATCTATCTGGTATATCAAGCAACAAAAGTAGAT
AGGAAATTTTTAGTTCATCATAGAATAACGAATTCAGAAGCCCATATAGGCTCAAAGGCACATC
CTTCCTCTTGCAATTTCTTATGCTCAAACAACACTACACCATGAATATTTTCCTTTATTCCATT
TCTTTAAACACACAAACGAAGAATATTGTTAAGTGGCTGAGGTCAGCCTGCAAGGGAAAATGGT
AAAACATGGTTGGAGATCACAGGAGGTGGAGGAGAGAGGCAAGGCAGTTGTAAACAGATGATGG
AGCCATGGGGAGAACTTGAGCTAGACTGAGGGCTGAGGCTTTCTTTTGTCATTTGTGCATGGGG
TTGATCACCTTTTTATAGGAGAGAATAACCATGCAGGGGCAGCTCATCCTAGACAGGTGGCTTG
TCCTCCTTGGTTCGACAGTATTTCCTTTGCTTTTTCACCTACCCACTTGATTTCTTGAATCAAG
TACAGATTATGACATTTCAAAGATTTAATTGCCAAAATAGGCCACACAACAAACGAAAGATCCT
TGGATGCACAAAAACACACACACAACATACAGAGTGTTTCCAAGGCAACCTTTCTCCCTTTACA
GGGTAAGGTATACTGTTCACAGCACTCTAACTGCTTTGGCGTGTTGTACACTGCCCTGGAAGCA
GGGTTTACTGCTTCAGCAACAGCTGTGGCCAGTATCATACAAGTGCAAAAAAAGCTTTAAAAAA
AATATTAAAAAATTAGACAAGGCCCAAACTTAATATATGATTTATCATGTCCAAATTTTATATT
TCCTTATCAGCCAACATAAATATATGAAAACCATGGTCTGTATCCACTTCATTAATCATAATAA
AAGAAATATATTTCAGAAAAGAGAAATACGTTTCAAAGGCATCAGATGATAATGGGCCCAATTC
CCTGATTTTCTTTGAGTACTCTTCTTGTTTTGCAAGAAGAATATTTCTTTTACTTAACAATTGC
TCCAGCTCTTTAGCTTCATCCTGAAGTGTCCTCTGGTAGTTTTCTTCCAAAGTCTGCATTCGTG
ACAAATTATCTTAGCAGCAACAACAAAAACTAAGAATCAGAAGCTTAAACATATAAGAGAGAAC
ACCTTTAACTTATTCTTTTCATCTTTGATCTTCTTGAGTTCCCTTGTGCGCTCCTCAATACTTT
TGGAAACTCCTGCACTAAAAAAGTTTAGTCAAAAGACAATATGAAGAACATTGATATTGGAAAT
TGCATGGAAGCAGTCCAAAGTTCTCACTTTTAAGCTGCTGTGTCACATCTTCAACAAGTAGTCT
GGCATCTCTTAGTTCCTGCCTCTTTACTTCAACTTCAGTGAGTAACATGTCACTCTCTCCAGAC
AATTTTACTGCCTCAAGTTCTTGTTTTCGCCTCACAAGGTTTGTTGATAGATTAGTCTCAAGCT
CTGCTTTTCTTGTTTCAGTCTACCAACGAATTGCATACATAAATGAGAATGAGAATGAAAAAGA
AAAAACAGCATGCATTTGAGCTTTACATAATAAACTCAACTAGGTCTAATTAGCAAACCTCTAT
GCGATTTGTCCTGCATGCAATTAGCGTCTCTTTCAGCTCAGTTATTTCAGGATTCAATCGTGAA
AGCAAATCTTTTTCCTCTGGTGTTAGATGATCAACAAGGTCTGTGCCCATTTCATCTTGTTTCA
TAGAAATATTGGCTTTAAGCTGAGCAATTTGAGTCCGCACATTTGCAAGCAACTTTTCCTACAA
GCATATAAGCATCAAAGAATTAGAACAGCCAAATTACAAATAGTAATGCACAAAGAGTAATGCA
TAGTTATTGAGATACCTTTTTCTCGAGAGCTTTAGAAATGGACTCTTTCTGCTTATTAGCATTT
GTAATATCCTGCTTAAGCTGCCCCAATTCAGATTTGTCATGAGCAAGCTTGGCATCATTTTTCT
GCTGCTCAGCAACAAGTTCTGTAATTTTCTGGTCTAT
						
					

			
		

Sequences
Splice junction sequence	TAATATCCTGCTTAAGCTGCCCCAATTCAGATTTGTCATGAGCAAGCTTGGCATCATTTTTCTG CTGCTCAGCAACAAGTTCTGTAATTTTCTGGTCTATcccaacagcagttctgtactgaggatcc aatgctgcatctatctcatcaaaaagataaaatggagcagggtcacatcgctgtatagcaaaga tcagtgtc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCCAACAGCAGTTCTGTACTGAGGATCCAATGCTGCATCTATCTCATCAAAAAGATAAAATGGA GCAGGGTCACATCGCTGTATAGCAAAGATCAGTGTCAATGCAACCACAGTTTTCTGACCCCCAG ACAACTGCTTCATCGATTGTGTCTCCCCTTGCCCAGTAAAAGAAACCTGCATATCAAGCCCAAC AAAGGAAACACTGAATCAGATTTGCTCAATGAACTAGAATAATAGGGCAACCTAATTTCAAAAT TAAGAAAATTCATTTAGCCTGCTTTGCAATCAGAATCCAACAAAAAGAGACCATGGCGTTGGCT GTTGCCACAATCCATTTAAGGAATTTTGCATGCTTTATAACACCAGCCACATATGATTTTGCTT ACTAGAAGGAACACAAATCTTTCTAAATGAGACTACATGCCTTGACTTTCACACCAATATATTT CTCCACCCTTCCCTCCATGTCAGGTGCACGAGGGGCATCATCATCCTCATCATCATCACCATGA TTACCATCCTGTAAAATGAAACCAAAACCCATTTAGGAAGTAGGTTTTAAGCCAGCAACTAAGA TGAAAGAAAGCTGTTTAGGAGTCTAGAAGTTGAGAAGCAACCTAGTATTTAAATGACAGACAAG CAGATTGGCCAATACAGTGAACAAGACTGTGTTTTGAAAAGTAAATACAAATAACAAACCTTCT TCTTCATCATAACCAAAAATCCATGGCCACCTTGCACAAGCTCAGAAAATACTTCTCGAAAATG CTTAGCCACGCCTTTGAACGTACGTTCTATGGACTCATCCTTCCGTAGATCCAAAACAGATATA AGTTCTCTAATTTTCTGCCAAAATCAATACCCAACCAAGCTGAACATATCAGAACTGGCTTAAG CTTGTACCACTAACTATAACTTCAAAATAAGATATCTGAATGATTAGAATTCAATTCAAGTACC TCATCGCCTGCATCCAATTCAGCTTGCCTTTTCTGGAGCTCTTCTCGCTGTTCCGTGAAGTTCA CATATTGATCAAGTGCTTTCTTGTTTACATGGCTGAACTGCTGTAGCTGCTCATTGCACCGGTG AAGCATTTTATGCAATTCTTTTATGCTCCTCCTTTTGTACCTGTAGTTCACAGAGAGAGAAAAC AAATATATTCATAAAAGTGTAAGTGATAGCATGCAAATATGGGTCAATCACCTCTATGTAAACT ACTAAAGGGCCAACAACAGAAACACCATATTCAGATATTGTCAAACAAACCAACTTCTACATGG ACTTCTGCAAAGAATCATATAAGGTTTTTTCTATCCTGACTCAATTTAATTTAGATATATTCAA AGCTGTTAGAAGTGTAAAGAAACAATGGAGGCCCTGGAAACAAATTACTATTCATAAAATTAAT GCAAGTGAACCGCATTCTCAGGGTTGAGCACAGCTCCTTGATCATTGGCATTAGATAATAGTTT TTAGATTTTTACTAATCAATTACAGGCTACCATCTATCTGGTATATCAAGCAACAAAAGTAGAT AGGAAATTTTTAGTTCATCATAGAATAACGAATTCAGAAGCCCATATAGGCTCAAAGGCACATC CTTCCTCTTGCAATTTCTTATGCTCAAACAACACTACACCATGAATATTTTCCTTTATTCCATT TCTTTAAACACACAAACGAAGAATATTGTTAAGTGGCTGAGGTCAGCCTGCAAGGGAAAATGGT AAAACATGGTTGGAGATCACAGGAGGTGGAGGAGAGAGGCAAGGCAGTTGTAAACAGATGATGG AGCCATGGGGAGAACTTGAGCTAGACTGAGGGCTGAGGCTTTCTTTTGTCATTTGTGCATGGGG TTGATCACCTTTTTATAGGAGAGAATAACCATGCAGGGGCAGCTCATCCTAGACAGGTGGCTTG TCCTCCTTGGTTCGACAGTATTTCCTTTGCTTTTTCACCTACCCACTTGATTTCTTGAATCAAG TACAGATTATGACATTTCAAAGATTTAATTGCCAAAATAGGCCACACAACAAACGAAAGATCCT TGGATGCACAAAAACACACACACAACATACAGAGTGTTTCCAAGGCAACCTTTCTCCCTTTACA GGGTAAGGTATACTGTTCACAGCACTCTAACTGCTTTGGCGTGTTGTACACTGCCCTGGAAGCA GGGTTTACTGCTTCAGCAACAGCTGTGGCCAGTATCATACAAGTGCAAAAAAAGCTTTAAAAAA AATATTAAAAAATTAGACAAGGCCCAAACTTAATATATGATTTATCATGTCCAAATTTTATATT TCCTTATCAGCCAACATAAATATATGAAAACCATGGTCTGTATCCACTTCATTAATCATAATAA AAGAAATATATTTCAGAAAAGAGAAATACGTTTCAAAGGCATCAGATGATAATGGGCCCAATTC CCTGATTTTCTTTGAGTACTCTTCTTGTTTTGCAAGAAGAATATTTCTTTTACTTAACAATTGC TCCAGCTCTTTAGCTTCATCCTGAAGTGTCCTCTGGTAGTTTTCTTCCAAAGTCTGCATTCGTG ACAAATTATCTTAGCAGCAACAACAAAAACTAAGAATCAGAAGCTTAAACATATAAGAGAGAAC ACCTTTAACTTATTCTTTTCATCTTTGATCTTCTTGAGTTCCCTTGTGCGCTCCTCAATACTTT TGGAAACTCCTGCACTAAAAAAGTTTAGTCAAAAGACAATATGAAGAACATTGATATTGGAAAT TGCATGGAAGCAGTCCAAAGTTCTCACTTTTAAGCTGCTGTGTCACATCTTCAACAAGTAGTCT GGCATCTCTTAGTTCCTGCCTCTTTACTTCAACTTCAGTGAGTAACATGTCACTCTCTCCAGAC AATTTTACTGCCTCAAGTTCTTGTTTTCGCCTCACAAGGTTTGTTGATAGATTAGTCTCAAGCT CTGCTTTTCTTGTTTCAGTCTACCAACGAATTGCATACATAAATGAGAATGAGAATGAAAAAGA AAAAACAGCATGCATTTGAGCTTTACATAATAAACTCAACTAGGTCTAATTAGCAAACCTCTAT GCGATTTGTCCTGCATGCAATTAGCGTCTCTTTCAGCTCAGTTATTTCAGGATTCAATCGTGAA AGCAAATCTTTTTCCTCTGGTGTTAGATGATCAACAAGGTCTGTGCCCATTTCATCTTGTTTCA TAGAAATATTGGCTTTAAGCTGAGCAATTTGAGTCCGCACATTTGCAAGCAACTTTTCCTACAA GCATATAAGCATCAAAGAATTAGAACAGCCAAATTACAAATAGTAATGCACAAAGAGTAATGCA TAGTTATTGAGATACCTTTTTCTCGAGAGCTTTAGAAATGGACTCTTTCTGCTTATTAGCATTT GTAATATCCTGCTTAAGCTGCCCCAATTCAGATTTGTCATGAGCAAGCTTGGCATCATTTTTCT GCTGCTCAGCAACAAGTTCTGTAATTTTCTGGTCTAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Tong et al., 2018

circRNA

Detail information of CSA023468_g_circ1

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