Detail information of Os06g0155300_circ_g.6


General Information
CircRNA Name Os06g0155300_circ_g.6
ID in PlantcircBase osa_circ_042261
Alias NA
Organism Oryza sativa
Position chr6: 2858949-2859149  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0155300
Parent gene annotation IQ calmodulin-binding region domain containing protein. (Os06t01
55300-01);Similar to calmodulin binding protein. (Os06t0155300-0
2)
Parent gene strand +
Alternative splicing Os06g0155300_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0155300-02:1
Os06t0155300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTCCTCCTGATCAGAAGAAACCGGTAGCACTGTCTCCTCCTGATCATAAGAAAACCGTAACA
CCATCTCCTCCTGATCAAAAGAAACCGGTAGCAAGGctgcaaggctcaatcagtctaagcaaca
acatcaatgatcgaaaagcccctaagaagaagtcatcaccatctccccctgatcagaagaaacc
ggtagcag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 201
Transcript exons: 2858949-2859149
CTGCAAGGCTCAATCAGTCTAAGCAACAACATCAATGATCGAAAAGCCCCTAAGAAGAAGTCAT
CACCATCTCCCCCTGATCAGAAGAAACCGGTAGCAGCATCTCCTCCTGATCAGAAGAAACCGGT
AGCACTGTCTCCTCCTGATCATAAGAAAACCGTAACACCATCTCCTCCTGATCAAAAGAAACCG
GTAGCAAGG

Genomic sequence CTGCAAGGCTCAATCAGTCTAAGCAACAACATCAATGATCGAAAAGCCCCTAAGAAGAAGTCAT
CACCATCTCCCCCTGATCAGAAGAAACCGGTAGCAGCATCTCCTCCTGATCAGAAGAAACCGGT
AGCACTGTCTCCTCCTGATCATAAGAAAACCGTAACACCATCTCCTCCTGATCAAAAGAAACCG
GTAGCAAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.14736932
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study