Detail information of Os03g0755100_circ_g.2


General Information
CircRNA Name Os03g0755100_circ_g.2
ID in PlantcircBase osa_circ_021954
Alias NA
Organism Oryza sativa
Position chr3: 31151329-31152377  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0755100
Parent gene annotation Half-size ABC transporter, Internal detoxification of aluminum (
Os03t0755100-01)
Parent gene strand +
Alternative splicing Os03g0755100_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0755100-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCATTCGCACAGTAAGATCGTTTGCTCAGGAGAGTCATGAAGTCTTACGATATGGTGAGAAA
GTAGATGAGACACTGAAACTCGGTCTCAAGCAAGCTttcagtttgcacagcgcttcgggcatgg
ctattcaattctgctagtgagagagtagttgctcgactgaggaaggacttgtttagtcatctag
taaatcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCAGTTTGCACAGCGCTTCGGGCATGGCTATTCAATTCTGCTAGTGAGAGAGTAGTTGCTCGA
CTGAGGAAGGACTTGTTTAGTCATCTAGTAAATCAGGCAAGTACCTTACTTCCATCGAAATTTT
TTCAGTGTTAAAGAAGTATTGCATGCAGCTATATTCATTCTCAACAGCTTATCTTGTGCAAACA
CAGGAAATAGCATTTTTTGATGTCACTAGAACAGGAGAGCTATTAAGCAGGCTTTCTGAAGATA
CGCAAATAATAAAGAATGCTGCTACAACTAACCTTTCAGAAGCATTGCGCAATATTACTACTAC
GTCTATTGGTCTTGGTTTTATGTTTGCAACTTCATGGAAATTAACATGTAAGTTCATCAATTCC
AAATGTTTTTTTTTGCTATATTTAAAGAACTTGTTGGTATTTTATTTTGGTTTTGTGAGGCTTA
ATTATGTACTTTGGCTTCATATGCTTAACTTAAACTTTTCAGATTAGCATTATTTTCCTTTCAA
ATCACTAAAGTGTGTTTGTCTTTTGATTTTATACAATTACTGTCTCACTGTGTATGTGTGATCT
CTGTAAAACTGAAGTAAACCTCATTCCTACTTTCTTCACAGTGCTGGCACTTGTAATTGTTCCG
GTTATATCAATTGCTGTGCGCAAATTTGGACGCTTTCTTCGTGAACTTTCACATCAGACACAGG
CAGCAGCTGCTGTTGCTTCATCCATAGCCGAGGTTTGTAGCATCAGAACATCCCGTTGTAGTTC
ATTGAGAATTTGAGCAAGTTAGTTTTTTTATTGAATCTTTTTTTCTTTAGGTGCCATCACCAAA
TATAAAAACCAAATATGTGTTTTAGTTTGATTGCTAGCATATGGTAGAAGTAAAATCCTAGGCT
CTTCATTTTTGTTCCTTGACAAATCTATCTAATTGTGTTCAGGAATCTTTTGGTGCCATTCGCA
CAGTAAGATCGTTTGCTCAGGAGAGTCATGAAGTCTTACGATATGGTGAGAAAGTAGATGAGAC
ACTGAAACTCGGTCTCAAGCAAGCT
Conservation Information
Conserved circRNAs NA
PMCS 0.192782555
Functional Information
Coding potential Y
Potential coding position 31151669-31151370(+)
31151356-31152316(-)
Potential amino acid sequence MFATSWKLTLLALVIVPVISIAVRKFGRFLRELSHQTQAAAAVASSIAEESFGAIRTVRSFAQE
SHEVLRYGEKVDETLKLGLKQAFSLHSASGMAIQFC*(+)
MPEALCKLKACLRPSFSVSSTFSPYRKTS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017