Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0576700_circ_g.2 |
ID in PlantcircBase | osa_circ_020514 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 21086968-21088235 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0576700 |
Parent gene annotation |
Similar to 60S ribosomal protein L13 (BBC1 protein homolog). (Os 03t0576700-01) |
Parent gene strand | - |
Alternative splicing | Os03g0576700_circ_g.3 Os03g0576700_circ_g.4 Os03g0576700_circ_g.5 Os03g0576700_circ_g.6 Os03g0576700_circ_g.7 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0576700-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_016085 |
PMCS | 0.165110752 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
21088215-21087450(-) 21087106-21088234(-) |
Potential amino acid sequence |
MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLK YNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPR RARKVKVRRRGGENGEAQQRYPQWPLQEALAELCQDMVQPARPQAEAPHCSPEEGCEDLPPPNI WPSSTHCSVPNFEVQHEVEGWERLYP*(-) MLQPLEFPWITAARTAHLRDSRLMSRGSRHTRPSWLSSQGVLARSR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |