Detail information of Os08g0170200_circ_igg.1


General Information
CircRNA Name Os08g0170200_circ_igg.1
ID in PlantcircBase osa_circ_036057
Alias Os_ciR4129
Organism Oryza sativa
Position chr8: 4107849-4112700  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000010604_circ_igg.1
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATTGATCTTGACAAGCAAAAGTATAAGCATTCAATTATAATGACATTGAATGAAAGGCAGCT
CATCAACGAAATCAAGGATCTAGTCGAGAAAAAGAGgagcattgttattattgatgacatatgg
gataagaaatcatgggaattaatcagatgtgcactgcaagatagtaattgtggaagtagagtag
tcgtaact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGCATTGTTATTATTGATGACATATGGGATAAGAAATCATGGGAATTAATCAGATGTGCACTG
CAAGATAGTAATTGTGGAAGTAGAGTAGTCGTAACTACTCGTATTTCTGAAGTTGCCACACATG
CGGGTTGTGTTTACAATATGGAGCCACTTTCTCGTGATGACTCTGAAAAATTGTTATACACAAG
AATAGCTAGTGCTGAAGGCAAATGTCTTACTAGACCATCAGCCGTGGCATGTGAGAAAATTTTG
AACAAATGTGATGGTGTGCCATTAGCTATAATAACAATAGCTAGTCTGTTGGCGAACAAACCCG
AAGAGGATTGGTCTGAGGTGTACAATTCCATTGGTTTTGGGCATGGAGGTAATAACGATGTAGA
GAATACTATAAAGATATTGTCTTTTAGCTACTATGATCTGCCTTCCTATCTAAAGGCTTGCCTA
TTGTATCTAAGCATATTTCAGGAAGATGTTGAGATCGACAAAAATCTTTTGATATGGAAATGGA
TAGCTGAAGGTTTTGTTCAGGAGAAACAAGCAGTACGGATAGGGTTATTTGAGCTTGCGGAGGG
TTGTTTCAACGAGCTGATAAACAGAAACATGATCCAGCCAGAGGTGTCACAATATGAATGGTAT
GGACCGAAGTTCCAAAGTGACCAAGTGTATGAGGAAGGCTATGTATATGGTTGCCGTGTTCATG
ATATGATTCTTGATATGATCCGTTCATTGTCAAAGGAAGAAAATTTTGTCACTGTATTGGACAG
CCATGAGCAGTCGGAACTTCCTCTGAGCCATGCTCGCAGGTTAGCCCTGCATGGTATGAGTATT
GAACAGCAAAACCGTTGTCAGATGGCTAATATGGCTGCAGAGCAAGCGAGGTCCTTTTTTGCCA
ACAAGTGCGATGATATTAGCTTGGTTTTCCCATACTTCCGAGCTGTACGGGTATTAGGTCTAGA
ATATTCAGCGGATTATGGTATTTGGCGGCATTTTAGGAGTTTATTTCACCTAAGGTACCTTGGG
CTAGTAGGTGTCAACATTAAAGATCTCCCCAAGGAGGTTGGAGATCTGAAGTTTCTGCAGACAT
TGGATGTGAAGAGAACTTCTATATCGAAACTGCCAGATACTGTGGGCATGCTAACACAGCTGCT
GTGCCTACATGCTTACGCTGCCGCACCGGTTGGTTTGATCGGGAAGCTGACATCCCTCCAAGAG
CTGTGGATTATAAAGCCTTCTGCAGCTGCATACATGCACCATGACGAGAATGCTGATGACATGT
GCTTCAGCGAGAAGGATGCTGGTGACATGTACTCTGATGAGAAGAATGCTGCAAGGCAGTTTGT
TAAGGACTTAGGTAGACTCAGAGAGCTGAGGGTGCTCCGGACTAAGATTGATGTAATGGATGAT
AGCATAGCAAGAGATTTGCTAGAGTCTCTAGACAATCTGCACAAGATAAGGTATTTGGAAATTT
TGGGTATATTATGGGGGATGAACGTCACATGGACCAGAACAGGATTCATCTCCCCATGGCACCT
CCGCCGCTTGTGTTTGGTATGCATCGAGTTTTCCAGATTGCCTGCTTGGATTAACTCGTCAGCT
CTTCCAAACCTCTCCTTTATAAACGTGACAGTGCAGGTTATCCAGGAGCAGGACATGGAAACCC
TTGGGATGTTGCCAGAACTATATTGCCTAAAATTGTACTCGCGTTACACAAACGTAGTTAGCAT
TAAGCATACTGGCAATGGTGGCTACTTCCAGAAGTTGAAATCCTTCAAGATTGTTGGCTCATCA
GTCCGGTTTGATCTGAGTTGCTGCGACTGCAGTGGTGGTGAGATAAAATCTTCTTTCATGCCAA
GCCTCGAAACCTTTGAGACTGATGTCCATGTGCGGTTCCTAGAAGATGCGAACATGCTTGGTTT
CGACAAGCTTGGCTTGGAGAACCTCCCTAGTTCGCTAAAGAGAATCATTGTTGTAATCTGTTGC
CGAGATGCCTGTGATGCAGAGGTGGAGGAAGCACAGGCGGCATTGGAGCATGCAGCTGACATCC
ATCCCAACAATCCCACTCTTAAAATTGATAGATATGGAGAAGAAATTAAACGGCCCTTGTGAGG
TATGCTGATGATATCCCTGATTGTGAGGTATGTGGTGAATATTCTCAATCTGAATTTCATCCTA
TTATTAAGTGCGCTCTGGCCCGGCTGTTCTACTTGTATGTACTGTAAAACTCCGCAGAGAGGAT
GATATACTGCTATCATGTTCTGTGGAATGTGCCCGCCCCGGACTGCAAGGGAACGAGAAGTCAT
GGTGAATTTGTACCAAATCATCAAATGAAGGGATACAGGCCAGAGATGTTTTTGTGTGTGTTGT
TTGGAGTTTTGACATCAAATTTGTAAATAGGATATGCTATATTGCTGCACACCAAATTGAAAAT
GTAAGACAAATCCTAAACCTTTTCACTCCATTTGAGTGTGTAAAGATGCTGCCAGCTAGGGCTG
CCCCTGGGGAGGGTACGGGTAACCCATACCAATTTTATTCATACCCATTTCAAAATTAGCTTAC
TCATAAATTAGGTATTATTCAGTAGTTATTGCTGCCGGCATGGATGGGACGTGGAGGCAGGATG
TCGGTTGCCACAGCCGCATAATAAACAATCATTTTCTATTTGTGTAGAACTTACTATTCTTTAA
ATGAAAAGTGAAGCTGAGTTTAAATTTATTTCAGACTCCAACTCCTGAAATTAAATTAAGAAGT
TGGAGCTCTACTAAATGGGCCCATAAATCATTAAACTTTATATCTACTCCATCCGTCTCAAAAT
ATTTGAACTAGGAGTGCATTTATTTTGAGATGAATGGAGTAGATATAAAGTTTAATTATTTGTA
GGGCCCGTTTGATAGAGCGTAGTACCTTATATATATAAATATATTACATGACTGTATATAATAA
TTCTCAAAAAAAAAGTTATAGGTGAGGTTTTTATGCGTCTAACGAACCGTCCACAGGAAGTTGA
GCACTCGAACTGCTCGTTTGAGCATGGCAACGATGTCTTTGTACGGGCCTCAGTAGTTGTGTAC
TTGTGTTGCCGCAACTTTTAGTTCTTTGCTTCTCCGTGTGAGTTGGTTTTCCTCAATTAATTGC
GCAGTTGTAAGGTTTTTGACCTGGTTTTCCTCCTAAACTAGATCAACTCTCTTCTTATTATTGA
AAGCAGAAGCTTCCTGCCCTCTTTTGAGGTTTGCCACAAAAGAGTAGGTGAGGTTTTGAAAAGA
AACTCTGAGAGCTTCTAGACGTTTCCATAGTTTTTGTCCAAGTTGTGACATTGAAAATGAGGGG
TATGACTAGACACATGTGGTGGTTGCAAGCACTGAGCAGAGAACCAGGAGGAGATGAATCCGGC
TAGCATCTCTTTACTTGGTTCCGTCTTCTCAAATCTCATTCACAAGAAGAAAAAAAAAGATTGC
CTCAACGACCTCGTCGTATCGTGCTAACTATGGATCACCTAGGCGAAGGGTAGGCCTTCGAATT
AAAATTTCAAGTGATTTCCTGATCAAAGTTTTGGATCTGTAGTTGGAAAGTCAGGAATTTCTGA
AATTTGTCTCCCATAGGATGTTCTGATCAGCTTTGAACTGAATGTTTTCTCACTGCATGCATAG
GAAGGTGGACCGATTTTCTACTTGGGACTTGGGAGTTCTTAGATACTTGACCTAAAAGTTTCAG
CTTTTTGGTTGGTAATTAAGATAAAATCGAGCAAGATGTTCTTTTTTTTTTTTGAAAGGAAGCA
GCAAGCTTGTTGTTACTGCGTCAGTTGAAAATTTCTTTAAAAAAGCCGAGTTAAATAAGAGTAA
AAAAAGAATTATTCTTGGAACCTCATTATGTTCTTTTTTATGATGAAGGAGAAGGTGAAGGATT
CGACAAATTAAGGTGCCACTCACAGAAGCTAAGCACTGGGGCAGATTAGCACTATCCATCAGTT
CAAAGCTGCTGCTGCCTGCTGCTGCGCATAGCTTGTTCTCAACTCTCAAGCATGGAGCTGGTTA
CAGGGGTGATGGGCAGTCTGCTCCCCAAGCTGGGTGAGCTTCTCAAAGACGAGTATGACCTGCA
GAGGGGCTTGAGAGAGAAGATCAAGTCTCTCTCCCGGGAACTCGAGAGCGTGCACGCTGTCCTC
CGAAAGGTCGGCGCGGTGCCATCGGATCAGCTCGATGAGCTGGTCAAGCTCTGGGCACGTGATG
TCAGGGAGCTGTCCTACGACATGGAGGACATTGTTGACATGTTCTTCGTGCGCTTCAATGACGG
TCATGAGTCCGATGACCCACGTGTGCTCAGGCGCTTCCGCAAGAAGATGAGCAAACTGTTCAAG
AAAGCCAAGGATCGCCGCGAGATTGCTGGCGCGATACAAAGAATCAATGAGAAGCTCTAGGAGG
TGTCAAATAGGCGTGCCAGGTACAGAGTCGACAGCTTTGTCACCAAACCTGCAGGTCCAGTGAG
CATTGATCCTCGCCTTCAGGCTCTGTACAAAAGGTCAACAGAGCTTATTGGCGTTGATGGACCA
ATGGACAAGATCATAAACATGCTATCACCTTGGAATGATATTCATCTGTCTGATAAGAAGAAGA
TCATCTCAATTGTAGGATTTGGAGGACTAGGAAAGACCACCCTTGCCAAAGCAGTTTATGACAA
GCTTAAACCAGATTTCGATTGTGGGGCTTTTGTTTCGGTCGGTCGGAATCCTGACATGGAAAAA
GTTTTAAGGGACATTCTGATTGATCTTGACAAGCAAAAGTATAAGCATTCAATTATAATGACAT
TGAATGAAAGGCAGCTCATCAACGAAATCAAGGATCTAGTCGAGAAAAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.655271831
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015