Detail information of Solyc08g069060.2_circ_g.1


General Information
CircRNA Name Solyc08g069060.2_circ_g.1
ID in PlantcircBase sly_circ_002613
Alias NA
Organism Solanum lycopersicum
Position chr8: 58145277-58148582  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI
Parent gene Solyc08g069060.2
Parent gene annotation Hexosyltransferase
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Solyc08g069060.2.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGGAAATTTGGGGAGACGGGGAATAAGTACTTCCGACATGCAACTGGACAGATATACGCCAT
CTCGAAAGAGTTGGCAACATATGTTGCCAACAACAGagtttggactcctccagaatcagatgga
aggaacatatttggaaggcgccagacgcaagaaagagtcttgccttctgtttctgatgattgtg
aaaccaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTTTGGACTCCTCCAGAATCAGATGGAAGGAACATATTTGGAAGGCGCCAGACGCAAGAAAGA
GTCTTGCCTTCTGTTTCTGATGATTGTGAAACCAAAAACAGTCAGGTCTAACCCCCCACCCCCC
AACAAACAAAGATAAAACTTTTTTTTTTTTTGTCATTGTTATAGTTATTATTGCTGTTTTTTTA
AATATGGATGATGTTTTATGAGCAGAAGGAGGAGATGATGGGAGAGTTTAACAAAGCACAAGTA
GCTATCCAGTGAGTTTCAGAGTTTTTCATGTGATTACCTTAGACTTTATCTTTTTTGTACTTAA
CATGACAACATATGTTACACCACATAAGAAATATGTTAATAATTTTTGTTTGTTTGTGAGCTCG
ACGTTGTTTTCACAAATTTATGGTAAAAAAGAGAAGTAGAGAGGAGGTGTTGTTCAAAACTTAT
GATGTTTTACTTAAATCTGTTCTTGATGTTCCTTCTCTTTATTGGAGCATTGAACAGATCGTTG
GATGATTCAATTGCTAAGATTCAAAGTGAGCTGCCTTCAACTAAGGATCCTCTAATTCCACGGA
TAACTGAAGAGGTTCCTTCCTTGAGGACAGATTCTGGAGGAAGTGGAACGAGAAAGAAGACATT
TATGGTTATTGGGATAAACACGGCCTTCAGTAGTAGAAAAAGGCGCGATTCTATTAGAGAGACT
TGGATGCCTCAAGGTATTAATTATAAGATTATTGATGTATATACTTCTTCGGTTTTCATTTTCT
TCCTCCTTTGACAACATTTTGTGTGTTTGCGTAGGTACAAAGCTACATAGATTAGAGCAAGAAA
AGGGGATAATTGTGCGTTTCATGATAGGCCACAGGTATGATCTGCAGTGCTCCATATCTTCTCC
ATGCCAAACATATAGATTCTCATTCATCAATGAGTTTCTGCTGGAGTCTCATATTCTTTCTTGA
TAATATGCTTCCTGTTCTTTGTTTTAAATATCCTTTGTTTCACTTAAAAGTTGAATGTATGATT
AGCTTTTCAAGAGATATACGAAGGAAATTATCAGAAGCTTTGTTAAGAGTTAGTAATTCACTAC
TAAAGATGAAATGGAAAGATTTAAGACAAGGTATAGAGAACTGCCAGTGAGTGATTATAGAATC
ATCTGTAATCTAGCATTCTGGCACCTTTTTCCTTTTCTATCTGGTAATGTGCAGCATGCCACTT
GTGAACGAAGCTGTAAGAAGTTCATTATGCTGCTTAAAGGGACCTGCAAGAACTTTGAATCTTC
TATAAAACACTATTTGTCTTCATATTTCTTAGAACAAAATACTAAAGGTATTTAGAGTTGGTAT
TCTAACTAAATTGGAGGGAGCAGCAACTCGGAAGTACTTACTTCAGTCCCATCACTGAAAGACG
TGACTTTCGGACTGGGAATGCCATTTGTCGCATAAGTTATGATGATCCATGCTAATTTTCCTAT
TGTAGCTTCAAAATTATCAAATTAAAGGATATTAGCTTTTGTTGAGGATGTAGATTTGAATCAA
TGACATTCAACGCTTCAATTTACTTCTGTCTTTAGAAATGTCAAAGACGTGCAAATATCTTGCC
ATGAGCAGTGTGATGTGCCTCTTAGTTGCTTAGTTCTTACTTGTGAACACTATTCCATCGATCA
ATTTAGTTGGAACTGAATTACGCTGTTATTGCATTTGTACTTATATTGCAACTGTAAAAGGCAA
AGTAATAACATCCTTTATGAGTTTCATGTTTGATGGCTTCTATACTTTTCAATCTTGGGTAGAT
ATATCACAAGCCCTGGAGTATGGCTTTAACTTGATGCCCAACATGATAAGAATAAGTGCAGGAT
AAGTGTTTTCTTTTGTCTTCTTTTTTGTTTCTTTTAATTGAAATTTTAAACAGCAGCATGAAAG
GTTACTGTTTATCAGAGTATGAAAGGTTTTTTCTAGGGCTAAATGGTGCATTTGGATATAAATG
TGGGAGATTGGTTCTCTTGTGGAAATTGTATCTTCCATGATACTAAGTCATAGATAAGCCATGA
GAGGTTCAGACACAGTATGTTGCACATTTTCTCACCTATGATAATCTGCCAAATGCTTTTTGCT
ATCCTTCTGGAGGCAGTTTACAACTTCCTAATTTTCGAGGTGTCTGTAAATTGAGTGATAATTA
CATTTCTGCTTAAGGGATAAGCTCAGTCACCAAAAGTTTCCATCTTTTCTTTCTGTTCACTTTG
TTGTGTTCAGATCATGTTATTGAATTTAATCCCGAAGAAGTTTGTACTAAGTTCAAAAATAGAA
GTTCAAGTTATTACATCACATTAGGTTCAAACAAAAAGACGAGTAGAACCATCTAAACTGATGA
AAGTTATTGGATTGCCCAACAAACTGGATCTTTGATCACTAGTTCTCAATAAGGATACAGCCAG
GAAATTCTATGTTTGAGGTTTACAACATACTTAAACGAGGAAAATGTTTCCTATTCTTTCACTT
CCTCTCTTTATTTTTTGATTGTTGTTTTGTTGAGCCTACACCAATATAATTATCTGAAATGTCG
TAGGCTGTGCTCTAAAAGTTCTTATACTCCTTAATACAGCGCGATATCGAATAGCATTTTAGAT
CGAGCCATTGATAGTGAAGATGCTCAGCATAATGACATTCTTCGACTTGTAAGTAAAAAATGTT
CTCTGATTTGCTTCCGTCTGATTGTTTTATCTTTCTAGTTTGATCTCATTACTATATTTTACAG
GATCACGTAGAAGGCTATCATGAGTTAACTGCAAAAACGAAAGCTTTCTTCTCCCTTGCAGTTG
CGAAATGGGATGCTGAGTTCTATGTGAAGATTGATGATGATGTTCATGTCAATTTAGGTACATC
TCCCTTTTTTTCTTGCCATATGTACATTATAGTTCCGGACAACTGAAAGCTGATGATTTTCACT
TATTTGGAAATTAATAGTTGAACACACCATGGTATTGTAGGTACACTAGCTGCAACTCTTGCCA
GGCACAGGTTGAAACCCAGGGTGTATATAGGATGCATGAAATCTGGACCAGTTCTTTATCAAAA
GTAACTTCTGTGAAGCTATTCTGGCCAGCTGAATTAACTATAAATTTTGAAGTTCAAAATTTCA
GGATTTTTTATTTACTAGTATCTTTTCCATTTTTTCCTTGATAGGAGTGTTAAGTACCATGAAC
CTGAGTTCTGGAAATTTGGGGAGACGGGGAATAAGTACTTCCGACATGCAACTGGACAGATATA
CGCCATCTCGAAAGAGTTGGCAACATATGTTGCCAACAACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.181866336
Functional Information
Coding potential Y
Potential coding position 58145504-58148579(+)
58148472-58145503(+)
58145314-58148345(-)
Potential amino acid sequence MMGEFNKAQVAIQSLDDSIAKIQSELPSTKDPLIPRITEEVPSLRTDSGGSGTRKKTFMVIGIN
TAFSSRKRRDSIRETWMPQGTKLHRLEQEKGIIVRFMIGHSAISNSILDRAIDSEDAQHNDILR
LDHVEGYHELTAKTKAFFSLAVAKWDAEFYVKIDDDVHVNLGTLAATLARHRLKPRVYIGCMKS
GPVLYQKSVKYHEPEFWKFGETGNKYFRHATGQIYAISKELATYVANNRVWTPPESDGRNIFGR
RQTQERVLPSVSDDCETKNSQKEEMMGEFNKAQVAIQSLDDSIAKIQSELPSTKDPLIPRITEE
VPSLRTDSGGSGTRKKTFMVIGINTAFSSRKRRDSIRETWMPQGTKLHRLEQEKGIIVRFMIGH
SAISNSILDRAIDSEDAQHNDILRLDHVEGYHELTAKTKAFFSLAVAKWDAEFYVKIDDDVHVN
LGTLAATLARHRLKPRVYIGCMKSGPVLYQKSVKYHEPEFWKFGETGNKYFRHATGQIYAISKE
LATYVANNRVWTPPESDGRNIFGRRQTQERVLPSVSDDCETKNSQKEEMMGEFNKAQVAIQSLD
DSIAKIQSELPSTKDPLIPRITEEVPSLRTDSGGSGTRKKTFMVIGINTAFSSRKRRDSIRETW
MPQGTKLHRLEQEKGIIVRFMIGHSAISNSILDRAIDSEDAQHNDILRLDHVEGYHELTAKTKA
FFSLAVAKWDAEFYVKIDDDVHVNLGTLAATLARHRLKPRVYIGCMKSGPVLYQKSVKYHEPEF
WKFGETGNKYFRHATGQIYAISKELATYVANNRVWTPPESDGRNIFGRRQTQERVLPSVSDDCE
TKNSQKEEMMGEFNKAQVAIQSLDDSIAKIQSELPSTKDPLIPRITEEVPSLRTDSGGSGTRKK
TFMVIGINTAFSSRKRRDSIRETWMPQGTKLHRLEQEKGIIVRFMIGHSAISNSILDRAIDSED
AQHNDILRLDHVEGYHELTAKTKAFFSLAVAKWDAEFYVKIDDDVHVNLGTLAATLARHRLKPR
VYIGCMKSGPVLYQKSVKYHEPEFWKFGETGNKYFRHATGQIYAISKELATYVANN(+)
MNLSSGNLGRRGISTSDMQLDRYTPSRKSWQHMLPTTEFGLLQNQMEGTYLEGARRKKESCLLF
LMIVKPKTVRRRR*(+)
MFLPSDSGGVQTLLLATYVANSFEMAYICPVACRKYLFPVSPNFQNSGSWYLTLF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zuo et al., 2016