Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Solyc08g069060.2_circ_g.1 |
| ID in PlantcircBase | sly_circ_002613 |
| Alias | NA |
| Organism | Solanum lycopersicum |
| Position | chr8: 58145277-58148582 JBrowse» |
| Reference genome | SL2.50.38 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Solyc08g069060.2 |
| Parent gene annotation |
Hexosyltransferase |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | 2 |
| Tissues | fruit |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Solyc08g069060.2.1:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.181866336 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
58145504-58148579(+) 58148472-58145503(+) 58145314-58148345(-) |
| Potential amino acid sequence |
MMGEFNKAQVAIQSLDDSIAKIQSELPSTKDPLIPRITEEVPSLRTDSGGSGTRKKTFMVIGIN TAFSSRKRRDSIRETWMPQGTKLHRLEQEKGIIVRFMIGHSAISNSILDRAIDSEDAQHNDILR LDHVEGYHELTAKTKAFFSLAVAKWDAEFYVKIDDDVHVNLGTLAATLARHRLKPRVYIGCMKS GPVLYQKSVKYHEPEFWKFGETGNKYFRHATGQIYAISKELATYVANNRVWTPPESDGRNIFGR RQTQERVLPSVSDDCETKNSQKEEMMGEFNKAQVAIQSLDDSIAKIQSELPSTKDPLIPRITEE VPSLRTDSGGSGTRKKTFMVIGINTAFSSRKRRDSIRETWMPQGTKLHRLEQEKGIIVRFMIGH SAISNSILDRAIDSEDAQHNDILRLDHVEGYHELTAKTKAFFSLAVAKWDAEFYVKIDDDVHVN LGTLAATLARHRLKPRVYIGCMKSGPVLYQKSVKYHEPEFWKFGETGNKYFRHATGQIYAISKE LATYVANNRVWTPPESDGRNIFGRRQTQERVLPSVSDDCETKNSQKEEMMGEFNKAQVAIQSLD DSIAKIQSELPSTKDPLIPRITEEVPSLRTDSGGSGTRKKTFMVIGINTAFSSRKRRDSIRETW MPQGTKLHRLEQEKGIIVRFMIGHSAISNSILDRAIDSEDAQHNDILRLDHVEGYHELTAKTKA FFSLAVAKWDAEFYVKIDDDVHVNLGTLAATLARHRLKPRVYIGCMKSGPVLYQKSVKYHEPEF WKFGETGNKYFRHATGQIYAISKELATYVANNRVWTPPESDGRNIFGRRQTQERVLPSVSDDCE TKNSQKEEMMGEFNKAQVAIQSLDDSIAKIQSELPSTKDPLIPRITEEVPSLRTDSGGSGTRKK TFMVIGINTAFSSRKRRDSIRETWMPQGTKLHRLEQEKGIIVRFMIGHSAISNSILDRAIDSED AQHNDILRLDHVEGYHELTAKTKAFFSLAVAKWDAEFYVKIDDDVHVNLGTLAATLARHRLKPR VYIGCMKSGPVLYQKSVKYHEPEFWKFGETGNKYFRHATGQIYAISKELATYVANN(+) MNLSSGNLGRRGISTSDMQLDRYTPSRKSWQHMLPTTEFGLLQNQMEGTYLEGARRKKESCLLF LMIVKPKTVRRRR*(+) MFLPSDSGGVQTLLLATYVANSFEMAYICPVACRKYLFPVSPNFQNSGSWYLTLF*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zuo et al., 2016 |