Detail information of BGIOSGA037911_circ_g.4


General Information
CircRNA Name BGIOSGA037911_circ_g.4
ID in PlantcircBase osi_circ_018947
Alias Chr11:32872342_32877197(MH63RS2)
Organism Oryza sativa ssp. indica
Position chrAAAA02035578.1: 32817-37672  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA037911
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA037911_circ_g.1 BGIOSGA037911_circ_g.2 BGIOSGA037911_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA037911-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATATGCATGATTAGCGGTGACCTTGGATGTCATCAAGTTCTGCCTGAACGAGTAACAATTC
TCCCTGAATGTTGTCTTCCTCATACATGCTGCAGCCccgcatatgaactttctcacgagaaata
acatccatatctgcatgataataatctgctaaaatacccctttcagacagttcttttgcgacct
gtttgtca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGCATATGAACTTTCTCACGAGAAATAACATCCATATCTGCATGATAATAATCTGCTAAAATA
CCCCTTTCAGACAGTTCTTTTGCGACCTGTTTGTCAGTAAAAGCACAGAATTATAAAATAGTTG
ATGAAGCAGTGTGAGAGATACTGTTGGTCAGCGGATGGCCATTTTAGAATACAAGAAAGTCCTT
GAAGACTAACCATGAAACTTAGCATTAGGATATAGTATAGATATAGATGCAGCAATCATGTGTT
AGGCATAGTGCATATCAAAAGAATCTCTAACAATTATAAATTCAGATGGTAACTGAAAATGGTA
AGCCATAATATTTAGTAAATGGAAGATGCAACCAATGAAATCATACTTTGCAAACATTTATTCC
CATTTGAGAAGAAAGAAAACAATCGGTTACTTGTCAATTCTTATTTTCAGAATGTAGTTCATGT
TAGCTTTATGTTTGCATTGAGAGAACTAAAGTTGACAATGTGCAGTCAGTAAAGTAGAGAAGTC
CAAGACATGGCTTTCAACCACTGCCCATTTTTAACTATATAAAGAGTAAATTTCACGAAACAGC
AACTATTTGTTCAAAACTGTAACCTTGCTGCATCTTTAGATGGGCGTTTCATAAAACAACAATA
GCATATAATTTTATCAAAAACAAAATGCAATGTTATCATGCACCAGTGTCTAGGGGTGGTAATG
GGCCCAACTATTTAGCCTACAAAATTTGAGGGCCTGGTCTAAAATGGGGTGGGCTGAAATTTTA
TACATTTTTGACCTAAAAATATGAGGGCAGGTATGGTTGTGAAAGAACCCATGGGCCTTGACCC
ATTACCAATCTCTTATTGCTCCAATCTTTACCGCAGCTACCCTATGTTAAATTTAGCATCTAGC
AAATCGAATATATATGAACTGACAGATAGTGTAGCATGTGAAAGACTGTAAAACACAAACCAGA
ATTGAATAGAAATTCAAAAGTTACAGATAGTGGATTATCCAACCAAATCACATGTCAGCAAATA
AAAGAAACTTGAAGCATTCATCAGTGACTATACTAACCTGTTCACATTCCTTCCTAGAAAAGCA
GTAAACAATCCCAGATTCATTATTCGGGTACGATTCACTTATAAAGTTTGCAATCTCATCAATG
ACAACCTTTCCAACTGGTGATTTCTCAAATACCTGAATAGCAAAAGAATGTTAAAGGCAAATAC
AACTATACAAGACTAGTGAAATGTTCTCTTCACATCTTCATTCTTCTGCATTGCACTTTCTTAT
ATTTAAGAAAAAGTCTACTGACTACTGGGGTGAATCTACTCGCTCCTAACAGTGGCTGCTCAAG
CTGGCAGCAGCAACTCAAACTCAGGCAAAGGATAGAAAATTGAAGGTTAGGTGAGGAAGAAGGG
CAAAGTGACATTTCTCTAGCTCAGTGTACAGATAGGAAGTGTTGGCAAAAGTTGTGGTATTAAT
TGGCACTTCCCAAGTTTTGTGGTATTCTTTGAATTTGGCAAAATCTGTGGTATGGATGGATTTT
CCTCGATTTGAAATTGAGAAAAGGCATACTTTATAGAAAAGGTTGGGCCTGTTAATTGTGCTGA
CAAACTTGACACATCTAGGGATATGAAGCATCTCTATCAAATCAATTTGCACTTTACTTGTCGC
AGTTGCCTGCAAAAAAAGAAGCAGGCCTTATTTCACATTACAGTTAAAATTTAATTATTGTAAA
AAATGGATATTATTTTCGCAACTCACAGTTAAAGCTATCATAGGAACACTGGGAAACTGGACCT
TTAAAATGCCAAGATTCTTGTAGTCTGGGCGAAAATCATGGCCCCATTGACTACAGCAGTGTGC
CTCCTGCATGATAACACTTAATTACAATGATAAATTGGTAATCGCAGACTCTAGATACACATGT
GCTTAACTGCTTAAAACATATGTCAACTAGCTATGCTCACACTTGATAAGATCATTATATGATG
AGAAACATAATAAAAACTAAAAACCAATATGAATAACTTATAAAATGTGAACAGTGAATAAACC
AATTCATCATAACTGCTCATTTTGTACAAGTGATTAGCACGAGTAGTAGACAATGGCAACAAGT
CTTCTTCGTTTTTTTTGCAAATCATTTTTTTCTAGTCCAAGAGGGATGGGTTAGTATTTAAATA
GTAAAACACACTCAAAGCAAAACAATATTCTTAAGAGAGACAGAGTAAGCAAAAGCATGTACAA
GCACATCATCCAACCTTAATCAGAGTAAACATGCTTTATTGTGTGGTAAAAAACTCACATCTAT
TGCAATGAGAGAAAGACGCCCTGCATGGTGGCATTTCTCAAGCTTAGACATGAACCTTTTACTT
TTGGAAATCTTTTCAGGTGTCACATACAATATCTTCAGTTCTCCTTCACCTTTATCAAGAGCCT
TGTAGACGAACTTCTCGACTTCCTTATTGGTAGTTGAAGCCAGCATGTATGCTTGTATACCTAA
AGCTGCTAGTCCCATGACCTAGAATTGAACAAATCAAATAATGGTAATGATCATATACAAGATA
AAATAAATTCTCATGGTAGTCATGGTGGCCTAGACAACACCATGTCAGCAAGCAGACTAGGCAG
GTGTAGAGGCATTGCCTGGAGAAGACAAGAGACTTAAAGAAAGGCTGAGCAGAGAGCAAAGAGT
TAGAAGAGAACCAGAGAGAAACATAGTAGAGAGTAGAAGTGAGAAGAAGAGAACAGAAGAAAGC
AGAAAATCACAGCATAGAGATAGGAGAACAAGTCTAATAGCGCTTGAATAGCTGGATCTGGAGT
CTGTGTTGATGACGACAGCCAGCTGGAAGCAATGTAGAATGTACTAGGCCACGAGGATGATGCA
GGCTATGCATGTTGCGATGAGCCCATGAGGGGTGATGACAACATGGACATGTGGGCTACTTTAG
GGAACGAGGGCACCAGAGAACTGGATATGAACCTCAAAATGGAGATTATAGTCATTAGCCAATG
GAAATAGCAAGGAATGAATTAGTTCTAGTTGTTTTGACTTAGTTATTGCTTTAGTTTTCAAATT
GTGACTGCAAATGTATATGCTTCTTTATATTCTTCTTGATTGAATAGGCAGAGCTCTGGCTGTT
TTCCTCTTCTTTTCTTCTAGAAGAGATTATAGGCAGAGACAGTGAGTATAACACGCGGGGGATC
ACTAGAGGCCAGACAGATAAAGCTTTGACAACACAGATATTATCCTATCTCTCTCATACGTGAT
GTCCATGGGTGTCCTTTTGTCTACTTGATGACTTGGAAAATGCAGTGAAAACTACGATCTTGAA
AGCTTAAATACCTGGTCCTGGATAAGGGAAAGCAAAGGACTAACAACCAATGTAATTCCATCAT
GAAGTACAGCAGGTAGTTGATAGCAGAGGCTCTTCCCTCCACCAGCAGCCATTATGACCAGTAC
ATCTCTTCCACTCATGATGGCATTGATTATCTGGAAGGTTGCAATATGCTTAAAAGGATGCAAA
ATAAAGAAACTGTAAGCAGTATAGCAAGTTGTGGTATGTACATCTAGGGCTAGGCTCAACAGTA
CCAAGAGAACAAAAGGGAAAGAATGTGGGGATAGTAACATAATTCTAAAAGATTATTTCTTTTT
GAGCAACACACAAGTTAATGATAAATAATAGAATACATATAGCAGCCCATGTATGTCTGAAGCA
CACCAAATATATGGTTTCTTCGCTAAATGAAATGATTATATGAATCTCACTTTGTATTTTATTT
CGTAGTTGTAAGCAGTGTCCAACATAAAAAAAGATAACTTCTACTCTTCTTAGTTGTTTAAGCA
GTGTCCAACATAAAAATATAGATAACTTCTACTAACCTTACCTCTCTTTGATTCTGCCGGTATG
AAGAAATCCCAAATACATTAAAACGAACATCATCAGCCCGAGAGTCCCATAAGAAGCTCCCAGA
CCAATCTTTTGGACCAACTGAAGGGGTATTATTGATTGTGTTGTTGGATGCTTTAGATACTTCG
AGCATAGCTTTCAGCTGTGATTCACGCTCATACAGCTCCTCTTGACGATCAATCAGTGCACTAA
TTTGCCCTGAGAACCATGAATTTAAGTGAGCAAAACGAAAGGATAATTTGTAATATGAGGAAAT
AACAGAGCACTAGCACCACAAAGGAAAAGGTGGCCACTGCTGATCATAATGCAAGTGAAGATAC
ATAATGACATTAGCAGCCTATTTATATAGGCATAGTTGCTTTGTTTCATCATAGTGTAAGGTGA
TAATTAGACTTCATGTAAATTAATGCAAGTGAAGATACATAATGACATTAGCAGCATATTTATA
TAGGCATAGTTGATTTGTTTCATCATAGTGTAAGGTGATAATTAGACTTCATGTAAATTAAAGA
CTAAATAGTCCCGGCAAAAATATTATGAATCCCGGCAAAAATTAAAGACTAAATAGGGATGTGG
TTTTGTATTATTTGTATGAAAGTACCTATGGATTTATAACAATTAGTATTTGTGATGTAATATA
GACAGTGATAAAATATTCATCAATGAGAAAAACGGAGCAGGAGATGCCAATCTAACCCCCGAAA
ATTGTTGTACTTGCTATAATTTAATTCAACTGCACTTAGATATGGTGAGCTAGAAACCCCTGCC
TCCCATTTATGTATTACACAGAAGGGTTAATCACTTGATCTCATCCGAGGAACGTTTATGAATC
AAAGGGATAGCACATATTGCAGAATATGCATGATTAGCGGTGACCTTGGATGTCATCAAGTTCT
GCCTGAACGAGTAACAATTCTCCCTGAATGTTGTCTTCCTCATACATGCTGCAGCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR5492
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021