Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037473_circ_g.2 |
ID in PlantcircBase | zma_circ_009038 |
Alias | Zm06circ00055 |
Organism | Zea mays |
Position | chr6: 126452845-126453192 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d037473 |
Parent gene annotation |
Transducin/WD40 repeat-like superfamily protein |
Parent gene strand | + |
Alternative splicing | Zm00001d037473_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d037473_T009:2 Zm00001d037473_T007:2 Zm00001d037473_T006:2 Zm00001d037473_T004:2 Zm00001d037473_T008:2 Zm00001d037473_T003:2 Zm00001d037473_T001:2 Zm00001d037473_T005:2 |
Conservation Information | |
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Conserved circRNAs | osa_circ_029842* |
PMCS | 0.348365906 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
126453005-126453189(+) 126452929-126453191(-) |
Potential amino acid sequence |
MDKLCKQVEKSSKYYEFQHNTRSVKPSILHFQLTRIRDTSAAEARAGKDIQGIPWERIHIARQD YRKARLEQYKNYENFPQSGELMDKLCKQVEKSSKYYEFQHNTRSVKPSILHFQLTRIRDTSAAE ARAGKDIQGIPWERIHIARQDYRKARLEQYKNYENFPQSGELMDKLCKQVEKSSKYYEFQHNTR SVKPSILHFQLTRIRDTSAAEARAGKDIQGIPWERIHIARQDYRKARLEQYKNYENFPQSGELM DKLCKQVEKSSKYYEFQHNTRSVKPSILHFQ(+) MCILSHGIPCISFPALASAADVSLILVS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |