Detail information of Zm00001d028477_circ_g.2


General Information
CircRNA Name Zm00001d028477_circ_g.2
ID in PlantcircBase zma_circ_000582
Alias circ128
Organism Zea mays
Position chr1: 36248533-36248847  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d028477
Parent gene annotation Chorismate synthase chloroplastic
Parent gene strand +
Alternative splicing Zm00001d028477_circ_g.1
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d028477_T004:2
Zm00001d028477_T001:2
Zm00001d028477_T005:2
Zm00001d028477_T003:2
Zm00001d028477_T002:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATATGCAGAGAAGATGATTGCTGCCATTGATACGGTACGAGTTAGAGGAGATTCAATTGGT
GGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgatcttggcatttgtttctaaagtgcac
caagtcgtacttccagaagatgcagttgattatgagactgtaaccttggaacatgtatcttctt
gtcactac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCAGTTGATTATGAG
ACTGTAACCTTGGAACATGTATCTTCTTGTCACTACCTCCCCCTCCAAAGCATTACAGGGATAG
TCTATTAGTCTTTGCACACATTTGATGATTTTTATCCTATTCTTGTAAATTTCAGATAGAGAGC
AACATCGTTAGATGTCCTGATCCAGAATATGCAGAGAAGATGATTGCTGCCATTGATACGGTAC
GAGTTAGAGGAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGT
Conservation Information
Conserved circRNAs NA
PMCS 0.435679048
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b