Detail information of Os09g0386600_circ_g.2


General Information
CircRNA Name Os09g0386600_circ_g.2
ID in PlantcircBase osa_circ_039068
Alias NA
Organism Oryza sativa
Position chr9: 13186067-13188403  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os09g0386600
Parent gene annotation Conserved hypothetical protein. (Os09t0386600-01)
Parent gene strand -
Alternative splicing Os09g0386600_circ_g.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os09t0386600-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTCAGCACATAACTTGTACAGACGCTGTACCTCAGAAGTCAGTGTATTCAAGCTTGCCTTTAA
CCCAGCAACTTCTCTTTCCTTCGCCCAAACATCGAGcaaacccctaacacgtcggcaatcctca
aaacacctttgagcctcttgaactgcgtttctcagttctggcaaccacctttctgataccatct
tttcttgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 117
Transcript exons: 13186067-13186124,13188345-13188403
CAAACCCCTAACACGTCGGCAATCCTCAAAACACCTTTGAGCCTCTTGAACTGCGTTTAGTGTA
TTCAAGCTTGCCTTTAACCCAGCAACTTCTCTTTCCTTCGCCCAAACATCGAG

Transcript length: 894
Transcript exons: 13186067-13186199,13186830-13187034,13187323-13187482,13
187615-13187800,13188194-13188403
CAAACCCCTAACACGTCGGCAATCCTCAAAACACCTTTGAGCCTCTTGAACTGCGTTTCTCAGT
TCTGGCAACCACCTTTCTGATACCATCTTTTCTTGTTCACCAGCTAATTTAAGACAGTAGTTGG
CCACCCTTTCATATTCCTGTTGAGCACGATGTGCTCGGTTCAGCAAAACACGATCATTCTCAAC
CAGATTTCTCCGCGTGTGCACCAAATTAATAGCCTTTGATAAATCCTCTAGTATACTAGCTTCA
GAACCACAAGGTTTTAGGCAGAACTCCAGTGAATTTAGAACTGATGCCAAGCCAGAATCAGTGC
CTTCTGTACCTGGTGAAACAGAATTGTACTGAAGAGCAGTAGAGATGCGGCATATGGATGGCAC
AGCAGATGGATCTCTGGCTCCAGCTCGTGCAGTTAACAAAGCAGCATGTTTCTCTGCAGCTGCA
ACTGCTTCTGATCCTGTAGCACCATTGGAGCCCAAAGCCTCCAAAAGAGCCTGAGGAGTTGCTG
GCAACCTGCATAAGCTGTTATCCAAGCTCTGACCAAACGCAGACAATTCTCGCTCGATGAGATC
CCTTGAGTTAGTTGACATGTCTACCACAGCATTACAAGCAGGGATGATTGTTCTTGACGCATAT
CCTCTTGCAGATAATGGCTGTTGCTCCCAAAATGTTGATGCCTCCATATTGGCCCGCAGAAGAG
CATTGTAAATGCACTCAAGTTCTGATCTACGAGCATCAAATTCTTCTATTTTCTTCCACTTTTT
CTTCAAGGAATCTTCCGCTTCTTTCCACTCAGCACATAACTTGTACAGACGCTGTACCTCAGAA
GTCAGTGTATTCAAGCTTGCCTTTAACCCAGCAACTTCTCTTTCCTTCGCCCAAACATCGAG

Genomic sequence CAAACCCCTAACACGTCGGCAATCCTCAAAACACCTTTGAGCCTCTTGAACTGCGTTTCTCAGT
TCTGGCAACCACCTTTCTGATACCATCTTTTCTTGTTCACCAGCTAATTTAAGACAGTAGTTGG
CCACCCTATATAAAGGAAACATCAGTAGCCATTCTTGAAACGTAGTAAGCTGGAATATAGATTC
ATTCCACCAAATATAAGATATTCAAGACCAATAAAAAAACACAGGACTACTTGTGATAAACAAG
GGCATCCCAAATTGCAATTCCTGGATTGTTTTAGATAGACATCAGCTGCACAATAATTTTATTT
CACTGCGTATCAGCATACTAAATAACATTTTGTGGACTTGTCATCAATTCAAAATTAAGAACAA
GTCTTCAGTTCATGAATCCCAATGGTACACTGCTCAATTGGTAAATGTTACAGCTGCCACATGC
ATTACACAGTGAACAAAATGTATTTGAAACGCATGTTAGAATTCTTTTCAATAACAAAACCCCT
ACTTCCAAGAGAAAATATGTACTGATAAAAAATACCCGAAATGAAATACTATTTTCTGAGGAAC
AAAATTGCAGGAACCGAACAAGTCGACAGAGGATGGAAGGGAATACAAACAAACATTGGCACCA
GTCCTACAAACTATACCGACAATCACTGATACACAAGACATCTCCTTTATGTTACAGTTCTAGC
TGGATTCAGTAAATATCTATTGTGAAGAAAGACAAAGATTAAGTAAAATTTCAGCGTACCTTTC
ATATTCCTGTTGAGCACGATGTGCTCGGTTCAGCAAAACACGATCATTCTCAACCAGATTTCTC
CGCGTGTGCACCAAATTAATAGCCTTTGATAAATCCTCTAGTATACTAGCTTCAGAACCACAAG
GTTTTAGGCAGAACTCCAGTGAATTTAGAACTGATGCCAAGCCAGAATCAGTGCCTTCTGTACC
TGGTGAAACTGTTAACAAAGACACCGTTAACATGTGAGTATACTCTATACAATCAAATAGAGAA
ATGTGAAAGCAGTTCCACAAATGAAAAACAATAGATGTTAGTAGATGTTATTAGTGGATGCACT
CAACAACAAATAATAATACCTACTTGGCTCAAGGCTTCATACCCAAGCCAAGAGCTAGAGACCA
CCATCTCCACCAAGTGGAACACATTTTGGCTTAACATGTTATATAATATCATAATCACACTTTT
TTTCTTGAACTAACAACAATAACAACAGCAGTGAACTTGCCAGAATTGTACTGAAGAGCAGTAG
AGATGCGGCATATGGATGGCACAGCAGATGGATCTCTGGCTCCAGCTCGTGCAGTTAACAAAGC
AGCATGTTTCTCTGCAGCTGCAACTGCTTCTGATCCTGTAGCACCATTGGAGCCCAAAGCCTCC
AAAAGAGCCTGTGAAAAAGAAACCACAGCAGTGACATAAGAGATTGAAGGAGTCAGCAGATCAG
AAACACATGATGGCTCTTATAGCCTTCATTCTGCTAGCCTGCTCGCTAAGACAGTTAACACTGT
AATGTTACCAACCTGAGGAGTTGCTGGCAACCTGCATAAGCTGTTATCCAAGCTCTGACCAAAC
GCAGACAATTCTCGCTCGATGAGATCCCTTGAGTTAGTTGACATGTCTACCACAGCATTACAAG
CAGGGATGATTGTTCTTGACGCATATCCTCTTGCAGATAATGGCTGTTGCTCCCAAAATGTTGA
TGCCTCCTATATATAGCAAGTTTGGCAACATCTTTCAAGAAGTGATCATGCCCATTGTATTCAA
TTATTGAGACATATATCAAGAGTAAGAAGAGTGTAAGACCCAAATCCATGAATCCCCACCTAAG
ATATTTCTAATAGCTCCTAGTTTCCTATGGTGCTACCTTCATAAAGCTGCCAAGCCACTATAAT
GAACATAATTATGACTTGAGCTCACTACGCTGCTGTATTAGATGGAAAGTTACTAAAATGGCAA
CCAGTAACCATGCTGGAAAGAATGTTGATAAGTAACTGCTTCTATTTCTATATTCATGTCTATA
TCTAAAACTTTCTTTAAAAAATTGAATAGCGAACTAAGTAAAGAGCTAGTAAGGAAAAGTACAA
AGGCTCCAGACTAACCATATTGGCCCGCAGAAGAGCATTGTAAATGCACTCAAGTTCTGATCTA
CGAGCATCAAATTCTTCTATTTTCTTCCACTTTTTCTTCAAGGAATCTTCCGCTTCTTTCCACT
CAGCACATAACTTGTACAGACGCTGTACCTCAGAAGTCAGTGTATTCAAGCTTGCCTTTAACCC
AGCAACTTCTCTTTCCTTCGCCCAAACATCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.224091973
Functional Information
Coding potential Y
Potential coding position 13188223-13186103(+)
13187771-13186074(+)
13188198-13186069(-)
Potential amino acid sequence MHSSSDLRASNSSIFFHFFFKESSASFHSAHNLYRRCTSEVSVFKLAFNPATSLSFAQTSSKPL
TRRQSSKHL*(+)
MAVAPKMLMPPYWPAEEHCKCTQVLIYEHQILLFSSTFSSRNLPLLSTQHITCTDAVPQKSVYS
SLPLTQQLLFPSPKHRANP*(+)
MEASTFWEQQPLSARGYASRTIIPACNAVVDMSTNSRDLIERELSAFGQSLDNSLCRLPATPQA
LLEALGSNGATGSEAVAAAEKHAALLTARAGARDPSAVPSICRISTALQYNSVSPGTEGTDSGL
ASVLNSLEFCLKPCGSEASILEDLSKAINLVHTRRNLVENDRVLLNRAHRAQQEYERVANYCLK
LAGEQEKMVSERWLPELRNAVQEAQRCFEDCRRVRGLLDVWAKEREVAGLKASLNTLTSEVQRL
YKLCAEWKEAEDSLKKKWKKIEEFDARRSELECIYNALLRANMEASTFWEQQPLSARGYASRTI
IPACNAVVDMSTNSRDLIERELSAFGQSLDNSLCRLPATPQALLEALGSNGATGSEAVAAAEKH
AALLTARAGARDPSAVPSICRISTALQYNSVSPGTEGTDSGLASVLNSLEFCLKPCGSEASILE
DLSKAINLVHTRRNLVENDRVLLNRAHRAQQEYERVANYCLKLAGEQEKMVSERWLPELRNAVQ
EAQRCFEDCRRVRGLLDVWAKEREVAGLKASLNTLTSEVQRLYKLCAEWKEAEDSLKKKWKKIE
EFDARRSELECIYNALLRANMEASTFWEQQPLSARGYASRTIIPACNAVVDMSTNSRDLIEREL
SAFGQSLDNSLCRLPATPQALLEALGSNGATGSEAVAAAEKHAALLTARAGARDPSAVPSICRI
STALQYNSVSPGTEGTDSGLASVLNSLEFCLKPCGSEASILEDLSKAINLVHTRRNLVENDRVL
LNRAHRAQQEYERVANYCLKLAGEQEKMVSERWLPELRNAVQEAQRCFEDCRRVRGLLDVWAKE
REVAGLKASLNTLTSEVQRLYKLCAEWKEAEDSLKKKWKKIEEFDARRSELECIYNALLRANME
ASTFWEQQPLSARGYASRTIIPACNAVVDMSTNSRDLIERELSAFGQSLDNSLCRLPATPQALL
EALGSNGATGSEAVAAAEKHAALLTARAGARDPSAVPSICRISTALQYNSVSPGTEGTDSGLAS
VLNSLEFCLKPCGSEASILEDLSKAINLVHTRRNLVENDRVLLNRAHRAQQEYERVANYCLKLA
GEQEKMVSERWLPELRNAVQEAQRCFEDCRRVRGL(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017