Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os09g0386600_circ_g.2 |
| ID in PlantcircBase | osa_circ_039068 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr9: 13186067-13188403 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os09g0386600 |
| Parent gene annotation |
Conserved hypothetical protein. (Os09t0386600-01) |
| Parent gene strand | - |
| Alternative splicing | Os09g0386600_circ_g.1 |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os09t0386600-01:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.224091973 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
13188223-13186103(+) 13187771-13186074(+) 13188198-13186069(-) |
| Potential amino acid sequence |
MHSSSDLRASNSSIFFHFFFKESSASFHSAHNLYRRCTSEVSVFKLAFNPATSLSFAQTSSKPL TRRQSSKHL*(+) MAVAPKMLMPPYWPAEEHCKCTQVLIYEHQILLFSSTFSSRNLPLLSTQHITCTDAVPQKSVYS SLPLTQQLLFPSPKHRANP*(+) MEASTFWEQQPLSARGYASRTIIPACNAVVDMSTNSRDLIERELSAFGQSLDNSLCRLPATPQA LLEALGSNGATGSEAVAAAEKHAALLTARAGARDPSAVPSICRISTALQYNSVSPGTEGTDSGL ASVLNSLEFCLKPCGSEASILEDLSKAINLVHTRRNLVENDRVLLNRAHRAQQEYERVANYCLK LAGEQEKMVSERWLPELRNAVQEAQRCFEDCRRVRGLLDVWAKEREVAGLKASLNTLTSEVQRL YKLCAEWKEAEDSLKKKWKKIEEFDARRSELECIYNALLRANMEASTFWEQQPLSARGYASRTI IPACNAVVDMSTNSRDLIERELSAFGQSLDNSLCRLPATPQALLEALGSNGATGSEAVAAAEKH AALLTARAGARDPSAVPSICRISTALQYNSVSPGTEGTDSGLASVLNSLEFCLKPCGSEASILE DLSKAINLVHTRRNLVENDRVLLNRAHRAQQEYERVANYCLKLAGEQEKMVSERWLPELRNAVQ EAQRCFEDCRRVRGLLDVWAKEREVAGLKASLNTLTSEVQRLYKLCAEWKEAEDSLKKKWKKIE EFDARRSELECIYNALLRANMEASTFWEQQPLSARGYASRTIIPACNAVVDMSTNSRDLIEREL SAFGQSLDNSLCRLPATPQALLEALGSNGATGSEAVAAAEKHAALLTARAGARDPSAVPSICRI STALQYNSVSPGTEGTDSGLASVLNSLEFCLKPCGSEASILEDLSKAINLVHTRRNLVENDRVL LNRAHRAQQEYERVANYCLKLAGEQEKMVSERWLPELRNAVQEAQRCFEDCRRVRGLLDVWAKE REVAGLKASLNTLTSEVQRLYKLCAEWKEAEDSLKKKWKKIEEFDARRSELECIYNALLRANME ASTFWEQQPLSARGYASRTIIPACNAVVDMSTNSRDLIERELSAFGQSLDNSLCRLPATPQALL EALGSNGATGSEAVAAAEKHAALLTARAGARDPSAVPSICRISTALQYNSVSPGTEGTDSGLAS VLNSLEFCLKPCGSEASILEDLSKAINLVHTRRNLVENDRVLLNRAHRAQQEYERVANYCLKLA GEQEKMVSERWLPELRNAVQEAQRCFEDCRRVRGL(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |