Detail information of AT2G06530_circ_g.5


General Information
CircRNA Name AT2G06530_circ_g.5
ID in PlantcircBase ath_circ_012981
Alias Ath_circ_FC1177
Organism Arabidpsis thaliana
Position chr2: 2589854-2590245  JBrowse»
Reference genome TAIR10.38
Type   ui-circRNA
Identification method find_circ
Parent gene AT2G06530
Parent gene annotation VPS2.1
Parent gene strand -
Alternative splicing NA
Support reads 21
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered AT2G06530.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATCAAAACTTGCGATCATCGAATATTTCACTAATTACAAACTCAATAAGCAACACAGATCCG
ACAAGAGACGAAATCGAGAGAAAGGAGGATAAGAACctctatacatgattcaaaaccacactta
agctacacaaacaattgcactacatgtaacctaatgatctatgcacatgaaaacaaatgaactc
ataatcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTATACATGATTCAAAACCACACTTAAGCTACACAAACAATTGCACTACATGTAACCTAATG
ATCTATGCACATGAAAACAAATGAACTCATAATCATCAAATCAATCAAAAGCTTTATAACTCCA
AACCATTTTACTTACACTGAGCTATACATGATTCAAAACCACATATAACCTACAAAAACAATTG
AACAACATGTAACCTAATGAACTCATAATCAACGAAGAGATCATATTCCTCAGAATCAAACCTA
AATTGATCTAATTTCAAATCAAGTATAAAAATTACAAGATCAAAACTTGCGATCATCGAATATT
TCACTAATTACAAACTCAATAAGCAACACAGATCCGACAAGAGACGAAATCGAGAGAAAGGAGG
ATAAGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.134172959
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a