Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037593_circ_g.1 |
ID in PlantcircBase | zma_circ_009050 |
Alias | zma_circ_0002324 |
Organism | Zea mays |
Position | chr6: 130777671-130780051 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d037593 |
Parent gene annotation |
Gamma-tubulin complex component 4 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d037593_T006:3 Zm00001d037593_T002:8 Zm00001d037593_T001:7 Zm00001d037593_T003:7 Zm00001d037593_T005:8 Zm00001d037593_T007:7 Zm00001d037593_T004:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.121521815 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
130780032-130777721(+) 130779566-130780042(-) |
Potential amino acid sequence |
MSLSIAVQLKWNHEICFGCRLTRW*(+) MSLLWKSSIKTSRVASFLIFCTNGAIVGFQNCKAAFRVTLQCVLNSLAYAPNRGSLFIHFLFIV FKKDRLLWHGHQVMFNQLTSWMVYGILQDQYSEFFIRRSTCLQGSSCYFVPVFDVSFLSAFLIF IFRQDDRDVENESSQRDVSDKLKQKLAKDTSLASWHTGFHVSLDMLPEYIHMRIAESILFAGKA IRVLRNPSPSATLQDPVIRTVGSHGMQSSVGGSGVPKELANFSNIRAEELLPQAEADKIDSMLK ELKHSSEFHKRPFESAVGSIRTIAANHLWQLVVVRADLNGHLKALKDYFLLAKGDFFQCFLEES RQLMRLPPRQSTAEADLMIPFQLDCY*(-) |
Sponge-miRNAs | zma-miR399b-5p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |