Detail information of Os08g0386800_circ_g.1


General Information
CircRNA Name Os08g0386800_circ_g.1
ID in PlantcircBase osa_circ_036944
Alias NA
Organism Oryza sativa
Position chr8: 18253742-18255459  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os08g0386800
Parent gene annotation Adenine nucleotide translocator 1 domain containing protein. (Os
08t0386800-01);Adenine nucleotide translocator 1 domain containi
ng protein. (Os08t0386800-02);Hypothetical conserved gene. (Os08
t0386800-03)
Parent gene strand +
Alternative splicing Os08g0386800_circ_g.2 Os08g0386800_circ_g.3 Os08g0386800_circ_g.4
Support reads 1
Tissues seed
Exon boundary   No-No
Splicing signals   AG-CC
Number of exons covered Os08t0386800-01:6
Os08t0386800-02:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTGTGCTGGGTGCAAACTTTGCAGCTGGCTTTGTAGCAGGTAGTCTTGCTGCTGGTGCTACAT
GCCCTCTAGATGTTGCTAAGACAAGGAGACAAATAGagatattatctgatttcagatgttcgcc
gtcatgcacacgtggtgtcattttgggaagtgagcctatttgcccacctgactgctttcagtac
aagggaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTGGGAAGTGAGCC
TATTTGCCCACCTGACTGCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGA
CAGGTAATGTGACTTTAATTCCTTTTTATAGTTTTATGCAAGTATCGATTTCTAGAGCACAGAG
AATTTAACACTTTTGGTTAATTGGTTGTTACAGGAAGGATTTGGTAGATTATGGAGAGGTACAA
ATGCAGGCTTGGCGTTAGCAGTACCAACTGTGAGTTTTTTTTCTCAATGTATTCCATTTTTGTT
TATGTTGTATTTGACAAATGTTCTATGATGTATTTTTACATGTGACTAGCATCTGTTGATTAGT
TCTGGTCTTTGTGGCAAATACTATGTGAAATAGGCATTGCCTGCACTTCTCTATGTCATTTGGA
CTTTACTAGTATAGTGCGTTCCACATATTTCTGCTTAGGTTTGTTGTCTTATATTAATCTACCT
AAAAAACTCAAGCCACTAGCTTATATGACCATCTTTTTCCCCTGAATAAGGTATACCATGCCAT
TTCTGAATTGGGCCTTAATCTTTAGACATATCAACCTGCTAAAATTAGATATATCACCTAATAC
TCCAGTCTGCACATGAATCTGACGTTATTTCTTCATGTTTTCTTTTTCACACCCTAATTTTGCC
TGTCATGTGACCCTTTAATGTTTGAACTGAATCTTGTCTTTTACTAATGAGTTTGACCATAAAC
AGGTTGGAATATATTTGCCTTGCTATGACCTATTTCGCAACTGGATTGAAGATTTTACACAAAG
TAATGCTCCTGGTTTGACACCATATGCCCCATTAGTAGCAGGATCAGTCGCACGTTCTTTGGCT
TGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAGGTATATCTCCATTGGAAGT
TTCTGGTTATTAGTATTTGTGTTTCTGTGAAACCAATTATGTCTATAATTTTTATTTTTGGGCA
TACAATTTGACAAATGTAATAATTTCTTTCTCACTTAAAAGCACCTAACAATCACTATTCTATG
TTCACAGGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACATTGCTT
GGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATGGTTAGTTTGTTCATTTCAATACATAAT
GGATTATTCTTGTTCATGTTTATTGCAACCTTGATATTCATAGTAGGATTTGTCAATTTCAAGT
ATCTATATCTCTGTTCTAACAAATGAAACAGTCTATTAAGGAAATGAATCCTACTATTAATGCA
TTTATACTGAAACAGCACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCG
GGATGTTCCTTTCTCTGCTATATGCTGGTCAACACTGGAGCCGGTAAATCCCTGTTCTGTCACT
TAGTAGTTATGTTTTTGTTTGCTAATGTGCATGCCAGTATCATTTGCTAAATTCATTTTAAAAT
TAATGGTATCTTAACTTACTATCATTGTATGCAGATTCGAAGAAAGCTGCTTGGTATCGTCGGA
GAAGAAGGTGATGCAGCTAGTGTGCTGGGTGCAAACTTTGCAGCTGGCTTTGTAGCAGGTAGTC
TTGCTGCTGGTGCTACATGCCCTCTAGATGTTGCTAAGACAAGGAGACAAATAG
Conservation Information
Conserved circRNAs osi_circ_017872
PMCS 0.234277129
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017