Detail information of Zm00001d023741_circ_g.3


General Information
CircRNA Name Zm00001d023741_circ_g.3
ID in PlantcircBase zma_circ_003115
Alias circ1466
Organism Zea mays
Position chr10: 18397161-18401674  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d023741
Parent gene annotation Alanine--tRNA ligase
Parent gene strand -
Alternative splicing Zm00001d023741_circ_g.4 Zm00001d023741_circ_g.5
Support reads 6
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d023741_T002:5
Zm00001d023741_T005:5
Zm00001d023741_T001:5
Zm00001d023741_T018:6
Zm00001d023741_T003:5
Zm00001d023741_T009:6
Zm00001d023741_T004:6
Zm00001d023741_T016:7
Zm00001d023741_T007:6
Zm00001d023741_T015:6
Zm00001d023741_T021:2
Zm00001d023741_T019:6
Zm00001d023741_T006:3
Zm00001d023741_T008:6
Zm00001d023741_T022:1
Zm00001d023741_T011:6
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: CGGGAAATACATCACCCATC
R: GAACATGAAAGCGTGGTGAA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTTCTTCTTCATCTCTAATAATACATTTGATCTTCTTTTCGTTGTCTTTTAACTCGGGAAAT
ACATCACCCATCAGTTGGACAAAAACATTTACAAGCcctggcctccttgttcagcatagaaact
tgtactttccagcacaagaccaaagtccccatcaccagtagctgtagtaatgtattctgagcca
gtatagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGCCTCCTTGTTCAGCATAGAAACTTGTACTTTCCAGCACAAGACCAAAGTCCCCATCACC
AGTAGCTGTAGTAATGTATTCTGAGCCAGTATAGATAGCCTTCACCACGCTTTCATGTTCCTAG
AAAATATTAATGGTAAGATCAAGAAAACACAGTAAACATTGGCATAACCCTAATGGTTGATTAC
AAATATCGAAAGTGTGGGAAGCAACAGAAGTTGAATATAACTAATAAGGGCTTGTCTGAATCCA
TTGGGATTCTGAGGATCCAGATAAAAAAAATCTACAAGCACTCAAACGGGGCAGATTATGGGTA
GGATTCTAGAAATCCTATGCCAGATTCTAGAAATCTATGTATCAACCCAGATAACACACGGTAG
TACATGCGAAAACTCACGCTTTCCCTTACCCTTATCTTCCCCTGTCGACTGACATCCTGTGTCA
TTCTCACCTATGTGGCTGCTCTTGCAGCCTCCGCCCGCCCCAGCCACAAGCGCCACCACTAGTA
GGCAACTTGGCTCTAGTGGTTGGTGCTGCGGCGAAGTTGAGAAGCATGAACGAGCGGCCTCGAG
CCTACTTTGGATGCAGCACGGAGCAGTGTACGCGACGGCTACAATGGCATGACAAGCACGCATG
TTGGATCCCCGGGCGATCGGAGACGTGTATCTGATTGGTCACCGGAGCGGCTGTATTTGTGGCC
ATGCGGGGCGGCGCCGTTGGCGGCAAGACACAAACAGGAAAGTGAATGCCCCAGTGGGTGAGGG
AGTGGCACAGCACCGCCTACATGGGTGAGATCAAGAATGGTGCAGTTCAGATTTACTCGCTGGT
ACGCACACTTCCTCTGTCGTCCTTCCTCTCTACAGATATGGGACCACCGCTTCACATTACGACA
TTGGCGACAACATCCACAATGTACTATACGGCTTCCTCACGCCAGGGAGAGCGGACAAACGGGG
ACTTGAGCTGGTGGTGGTGATGGCTGATCAATGGAGAGGCCTGGGAAGGGGCGTACATTGTGGA
TCAAGATGCAGGAGTGATTGGATGCTGCAGGGGATATTTGGAGGACAAAAAGCAAACCTAGCAC
AGACCAGAGGTGGTGCGGGCAAGCGGCAATCAACAGGCACAGTGATGAAGATGAGATGCACTTA
ACGTGGACCTAGGCACTTCATGCGTTCTTATGTTTTCCTTTTTTAACCACTCCGCTAATTGAAC
ACAATGTAGAGGGGTATTTTGGAGAAAAACTCTTTGAAATATCTAGAATCCATAACTAAAAACC
AAGGACTCATACAGGTAGAGATTTTATTATTCAAAATCTGGATTCTAGAATCTGGATTCTAGAA
TTCCCTAGGATACAAACAGGACCTAAGTATAAAAAAACTCAGCCGTTAGGGGAAAGACCACCCC
CATGGTATTATATTAAGAACAATCTCAATTGGAGCCCCAACCGTGAAAGGTCACGAAAGCTGGT
CCCCCGTGCAACATGAGGGTCTACCCCCTATAAGCCAGATCTTTACTTGTTCTTTGAGCCCTCC
CGGCCCCTACACGAGGATCCCCCTAGGTCAGTCCATCTCATGTGCACACAACTAAGGGAACCAG
CGAGTGACATTTTTTAACCTCGGCCTGAAATTCGCTCCCACTGGAATTCAAACTCAAGACCTGA
GAAAGTAAGAAGTGCTACTCAGACCACCTAACCAACTGGGATTCAAACAGGACCTAAGTATAAG
TTGTAAGATAACAAAAAGTCTAACTTGTTAGAACTTAATGTGATTGTATATCAGGTTACGGCCA
TATCAGAGCAAGGGTCCACACAGTTGTTCTATAACAGAGGAAGACCTTAACTGACTTCGATTAA
AGATAGGATAGAATTAGGTTTAATCTGTCCCAGAGACAGCAGAGTTCGAATTGGAGTCAGTTAG
GTAGTTGTACCCGAGTTGGACGGCCTGTCATGTTGTAATCCTGATGGTGGTATTCGGCCCTATA
TATACTCAGCCCCCTCGGTCAGGGCGAACAGCTAAAACCTAGTGCCGTGTTTTCGTTTTCTTAC
ATAACTAACCTTGGGCCACAGAAACTTTGGGCTATCGTCCGTGCTGGCAAGCCCCAGTTTGCGC
AACTGCGCTGTAGCATTCGCATCCATAGCAATAGAGTTCCCTCCAGACTGCAAAAAGAAACATA
TATAATAAAAATTGAAGGGGTGAAAACAGTTACCATGAAATTCAAAGATAAAAAACAAAGAACA
AACATAACAGATTTCAATACCAGTAACATATAGATATTGGAAAATGTTATCAGCAAATATAGAA
ACACAAACAGCAAGAATAATGGGATAACAAATGGCACCACAATAGACTCAGGATTAGCTTCTAC
ACTTAGCAGAAACGTAAAAATAACCTTGTTACGAGCATTTCTAGCTTTTTGCCTCGCTTCTTCC
ATAGAAGCATTAAACCCCTTCTTATCAACAGTTAGCCCATAGTCGATTGCCATGACCTACACAA
AGAAATCATAATAATGCATGGTAAACGTAAAAATGTTCCAGCAAATTAGCTGGCTAAAAGATAA
ATAACAAATGTAAAACTAACCTCAGTCAAATCAATTGGATAACCATAAGTGTCCCAAAGAATAA
ATGCATCCTGAAAGAATAAATGAACTATTTAAGTACATCAAAAAGTGAAGGCACCCCAAACTCA
GAAACCATTTCATAGGGAGGAATGTCTAACCACTAGCCAGGTCCACTCATGCAGCACAACAGTT
TTCGGTTGCCTAACAATCATGTGCCTGGTCCAAATGGTGCAAGCGCCCAAGCTTGGCCCAACAG
GTCTACTGGATCCATAAATCCAATCAAATATGCTAATTATGTTGTAATCTAGATGAATGAGTAC
CTAAATCTTTTGTGTTGTACTCTGGATTGATAGGCTTTTACTGATGCTAATTATGCAATGTTGT
TAAATTGTAAAAATAACTAGTCACGGTTAAAATTCCACTATTATTAATGAACAGAAGAAACCTA
TGATGACCTAGCCAAATTCCAAAGAAGAAATAAAAAGGTTCAAACTAAGGGGTAACCACACCAA
ACACCATCAATTGGGCCAAGGCAAGACCTGCACCCCTCGACACATCCAACTCATACGACATGGC
TATCACTCCCACTACAAGATGCTTTGCACCAAACAGCATGGACGCACCCTTCAACACATCCAAC
TCATACAACATGGCTATCACTCACATCACATGCTGCCTTGCACCAAACAGCATGGACATGCACC
CACAAGTCACAGATTTGGGTTGGGATAGTTGGGTTTTCAGGCCAGGCTAATGAATTCACCCTGA
AAATCACACCCTTAAATAGTTCAGGTAGGGTTTTAAATGTGCGGTTTTAACAAATAAGACTGGA
TTCTCATCCATGGAAAAAGATCTATGCATGACAGTTCTAGAAACATTTGCATCTGACTCAATGA
GAAGGAACTCCTGTGATACTTTCAAGTATTAACAGATAAAAATTAATTAAGAATACTAGCACAA
GCTGCATTGATACCCATGGGATCATACAGCACAAGCTGTGATACTTAAGGGACCGTCTGTTTGA
GGCTTTGAGCCTAAAATTGCTAGTTTCACAGCTAGGGGTGACAATAGGCTCTAAATTTTACACT
ATAAGATATAAGGATCGGATCAGATTAGGATCGGGCTCTATTTCTATTCATTTTTGAACTAAAA
TTTATTTAGGGCCCTACCATTTTGTGAAGAATCATTTGGATCGCAATCCATTACCACCCCTATT
CACAGCCCTAGAATCAATCAAGCACCCAGATTGCAATACCAAATTATAGTACAGACCCCCACAC
TGTAACATCTAGCAATTCAACCATCTAGAAGCTGCTTATCACAATCAACAGCTGAAACAATCAG
GCACTAAATATGGTGCCACTATAACCAATTTAGATGCCTTGGGCTATTCAGTGGCCACTGTTGC
TACAGCAGACTGAATGGGCAACAAGTACAGGTTGTAAAAGCACAAGCAAGAACCCTGCAAAGTG
CAAACATTACACCAGAATAGAGATGCCCTACCCACCTACCTCAGAAAACAAAGCATTTTTATCT
TCAAATGAAAATAAAAACAAATACACATTGAAATTCAAAAAACAAAATCACTTGCCTGTCCACT
AAGTATAGTTCCACCATTATCCTTAACAGCGTCTGCAGCTTTCTTAAATTTTTCATAACCCTGA
AAAATACACCAAAAGCACTAGTGATAAACTGGTAACAGAGGCAAACAATACCAAAAAACAAAAC
CTACAATAGAAGATCCATGCTTCTAGTGAAATAGAAGATTCATGCTCTAGTGAAATAATAAACA
GATGTTATAGTCAGGAAAAAAAACTAGGAAACTAATATTACCTTTGCTAGAGTGTTCTCAAAGC
TTTCTTCTTCATCTCTAATAATACATTTGATCTTCTTTTCGTTGTCTTTTAACTCGGGAAATAC
ATCACCCATCAGTTGGACAAAAACATTTACAAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.00611286
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b