Detail information of Os10g0560850_circ_g.1


General Information
CircRNA Name Os10g0560850_circ_g.1
ID in PlantcircBase osa_circ_008007
Alias NA
Organism Oryza sativa
Position chr10: 22105809-22106021  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene Os10g0560850
Parent gene annotation Hypothetical gene. (Os10t0560850-00)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TG-AG
Number of exons covered NA:0
Os10t0560850-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAGTTTCTTTCAATATCATTTTTAATGGGAAAGGTGTTATCAACAATTCTAGTTGTTATCAAT
ATAGTTTCGTTTTGCAGAAACTCTACCAACTTCTCAgtccaacctttttttatcatctgctttg
cttccatgcatatcaaattttcatttttttattattatttcttccatgtaataactgcctttga
gataagcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 213
Transcript exons: 22105809-22106021
GTCCAACCTTTTTTTATCATCTGCTTTGCTTCCATGCATATCAAATTTTCATTTTTTTATTATT
ATTTCTTCCATGTAATAACTGCCTTTGAGATAAGCCTAAACAACATGTTCTAGTTTCTTTCAAT
ATCATTTTTAATGGGAAAGGTGTTATCAACAATTCTAGTTGTTATCAATATAGTTTCGTTTTGC
AGAAACTCTACCAACTTCTCA

Genomic sequence GTCCAACCTTTTTTTATCATCTGCTTTGCTTCCATGCATATCAAATTTTCATTTTTTTATTATT
ATTTCTTCCATGTAATAACTGCCTTTGAGATAAGCCTAAACAACATGTTCTAGTTTCTTTCAAT
ATCATTTTTAATGGGAAAGGTGTTATCAACAATTCTAGTTGTTATCAATATAGTTTCGTTTTGC
AGAAACTCTACCAACTTCTCA
Conservation Information
Conserved circRNAs osi_circ_008701
PMCS 0.403234468
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017