Detail information of Solyc03g117420.2_circ_g.1


General Information
CircRNA Name Solyc03g117420.2_circ_g.1
ID in PlantcircBase sly_circ_001166
Alias SL3.0ch03:68040454|68044991
Organism Solanum lycopersicum
Position chr3: 66556206-66560743  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc03g117420.2
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc03g117420.2_circ_g.2 Solyc03g117420.2_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Solyc03g117420.2.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAAATAAATCATAAAATTTGAACTCGCCTGAAAATTTCTCACATCCATCATCAGTCAAACAAC
ATCTGCTCAGGTTTAAATACAGCAGAGCATGAAGAGccagaaatcacttccaagctcttgtcag
tcaggtgactgttttgagaaagattcagcagtgtcaaggacgtcaggtccttgatgttctttac
accagcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGAAATCACTTCCAAGCTCTTGTCAGTCAGGTGACTGTTTTGAGAAAGATTCAGCAGTGTCA
AGGACGTCAGGTCCTTGATGTTCTTTACACCAGCATCGGTTAAACCTCCACCACAAATTTCCAG
GGAACGCAGATTCTTAAAATCTATCAACAGATTTAATTGACCAGAAAAATCATAATCAGAATTG
AGATGATTAGAAGTGATGAAATTTAAGTCTGAATTACACCAGATATAGAAGTATGGAATGTGAT
TTAGGATTCAAACAAAAAGGGGCTAGGGAGGGGAGCATGAACACTTTGAAAAGTAGAGCAGCAC
ATCAGGATTAACATTTGTTTCACATGAATAACAGGCCATCACTATAGCCACAAGCAACAGGAAT
GAACTATTTTACATATCCTTCATATTACCAGCAATAGCACTATCGTTAAAGCCCACACTCTAAA
GGATAATAAATAGGATATAGAGGCAGGCCAGCAGGGGCAAGGAAAGCACCAAAAGTTCCACAGG
ACAGACTCAGATATAAGGAGATCCCAATTGTTGCATAAAATTGATAAGACGTACATCGAAGATA
GCTTGTTCCAGAATCAGTGATCTTAGCTCCAAAAAGGTCCAAGTGAGTTAATCCAGTCAAGCCT
GCATTTACAGAAACCATATTGGACAAATCAATTCTAATAAACACAATTCATATTCTAGTAACAT
AAGCTCTCACATAGTTGCCACTTAAATTATGGAAGGAATCCCTTTATGAAATATGTAAGCATTA
GCATGACACTACTATAATGCCTGAGGAGCAACCTATTTCAACAATTTTTGAAAACCATAAGAAT
ATTCTTAGGCTTTCAAGTTCAACCAGTAAAATTAAATAGCAAAAGAGAAAAGCTGTTGTACAAA
TCGACTACTCAAGCACCAAGCGTCCAAAGAAAGGAATTCCCTTCAAGTGATGTCAAGGAGGACA
TTCACAAGGAGTTGAATCCCAGGACTTGCATTTGAGGTTGAAGCGGGATGTTCTTGAAGAGATC
AAGAACGGAGCTTACAAGGATTACAAGCTCCGTAATGGAGTTTGGAAGATGCAGATGACACAAC
ACTTCACCCAGAGATGGGAGACGAACTGGACCACCAAAAGATGAGTTTTGAGGCCCTTAGGTAT
CCAGGAGATGGGATACACTTGGACAACCAAAGGATGAGTTTAGAGGCTCTTAGATGTCCAGGAC
TTCAACCTGTAGTCAGAGAAGCGCCAGCTCAATGACCTGAAAGATGTAGGATGACCAGCATCTC
AACTTTTCCCTAATCAACCTGACTAGCTGACATGTTGATATTACCTTTGGTTTGGACTTCCTCT
AATTTATTTACAGATATTTACGGGTCACAAAACCTATTTGAATTAGCCTATAAATCATTCGTTT
CAACATCAGTTGGGAGACGTTTCGACTCTTAAACTTGTGGAGCTAGGTAGACCTCTATGCTCTT
CGGGGTCGATCAAAAAAGTTAACACGGGAGTGATTTGCTTGTACCTCTTCTTCTTCGCTTTGTA
TCTTTAGTTCATTTGATAGAGATTTAAGAGATTATTAATTTTGTTAATATTAACTTTAGTCTAT
TTCCCATACTTGGGATTTTTTATGTCAATTTTATCTTAATATACTACATATTCTATCCTCCCCT
TTCTTTTTAAACTCTTGTAAATTTGGGAGTTGACACAGCATTGATTGACGAGCCACGCAACAGT
CAACAATAGGCAGGAAGAGCAGGCCCTAGAGTTTAAAAGATTCAAGTTGAGCAGGAATACTATT
CAAAATTTTAGGGCCCGCTCTAATAATATAGTAACTTGTGCATTGTTGGGCATCGTTAGATCAT
GTTCAAAATTGAATAGGATGTTGAGATCCTTGTTTCATTTGAAAAAATTAGAGTACATCTGCCA
CATTCTATCCAAAATCCGAGCTAATTTTAAGAAGAAATTATGCGCTGTGTTAAGTGCAAAATCC
TCGGACTCAAAATTTACTTTTGAGCTAATTCTTGCTTCAACATGACGACTTTGAGACCTCTAGT
TCATGAGAAAAAAATTGAGTTGAAAGTGACACCATATCGTAAAATTCTTACTTGTAAGTGCTGC
AAGCCCAGTATCAGTTATTTGGCGTGCGTCCAAATTGAGCGACCTCAAAGAGGATAGCCCACAG
AGCTTCTTTAGACCACTGTCCGTGACAACAGTGAAGGACAGATTTAAGCTCTCTAAATTCCTTA
GCCCTGCACATTAAAAAAGCAAACAAATTGCATAAGCATAAAACGCAAAGCAGCGTCCATTTCT
CTAATCATAACATAGGCTTCACGAAAAGGTACTCCCACAGAGATTAGACTTCAGTGTTTTCCCT
TCGATGCATTATAAATTGCAAGGAAAAATGAAAAAGAAGTGGAAGGTTTAGCCAAGATAATTTT
GGAAATTAGAGCCATCAAGGTCTGAGCCAAATTGAGCAAGGGCTGCCACTTCGCGATATTGTAC
CAATTCCCATAAACTAGTATCTATTACATTTCCCACGGCAATACAGAAAGTGGATTAAGATGGG
CTTAAAAGAAACCAAACCAATTCAGAAATCCTCAAGTCATAACATTCAAGTTTCACTCTCAATC
TGCTTCGTGCAGCTATAATGAGCTTCAACAACAGAAACATGGAACAGGTTCGTTCCAAGAAAGT
TTACCCAGATTTTGTTTACAAGGAATTATCTTGAAGACATCTTTTAGGCTAGGAGTAATAATAA
AGTTGGTGTAGGCATAATTCAATTCAACTCTCGACTATAGCCAACTAATTATTTGATCTCTCTT
AGCTTTACCTACACAAAATTCAATGTGTCCTGGTTCACCCTAAAAAGCAAAGTAGAAAAGAAAA
TCAAGACACGATCATCTCATCAGAAGTGGGATGGAACCCAGTCCAGACTCCAGCGCAGTTCTTG
AATTTCTGAAAGCTTCAACCGAATGAAGAAAAACCAGAGTACAGTTCAAATTTCTACAGTAAGC
ACGAGGCACAAGAGAAACCTGAGAGATGACGAATCCCATTGTTTCCAACTTCGGTGTCAGACAA
CTCCAAACTCTTCAGGCGATGAAGACCTGAAACAGAATAGCAAAAAAGAGGGAAATTGGAAAAT
AAAACAAGCTAGAATTACACCAGTCGTCAAATAAAGTTACGGAGACTTTAGTATGAATTGACCC
AAAGAATTGGTCAAGATATCTATTAAGGCATAAGATTGTTACCAGAAAAGGATAACAGGAAAAT
ACTTTCCAAGGCAAGCAATCACAACTAACATTCAGTTTCCCTTTTTAGTTAACACATAAAGAAA
AAGTTTCAATAATATTAATTTGCGAATGTTGTTTATATATCAATTGATGTGGAGACAAATAGAA
GTCTAATTAGTTTGTTATGAGGCACCGTTAACTGATACCGAGTGAAACACTGACCTGACAAATA
AATCAGCCCTTCATCTCTAATCCTACATGAGTCCAGGTTTAAGCTCTCCAAGTATGACAAACCT
GCTCAAAGCAACACAAAAGCTTGAATAAATTTATATCATCAGACCATATGCTAATGTTTCCTTT
TTGACAGGTAAAATCCGACTTAAAAACCTCATGCTAATCAAGTTCAGTATCAAGGACACCATTA
GGTTTAACGTTCGGCTTGTACTCGAGCACATAAAATAGTAATCGATGTAACCACAGAAGAGATG
ACAATGAGGATGGCAGAGGGCGGCAGGCGGAGTACAAATCCCACCATTATTACCCACCCCATCA
GTTGTGTGCACAAGTCATATCAGTTTAATGAAAAAATTAGCAATCCCCTTTCTACTCCATTTTT
GGAGTCATGGAAGGAGAAGGGGCTGATTCTTTTTTGGGAGGGCAGGGGACACAGCTAATTCACA
ACTTTATAGCCAATTTACAAATCAACAATCAATAATACCACCTCACTCAGAACTAGAACTTGAT
TCATGAACCAGGAAGGCATACAGATTTATCAAATACAATCTCTAACCACCTTGTATACCCATTC
AAAATCTCCACACAACAATTCAGTGAAGTTATCATTCATCCTTGAGACGATCATAACCATCCAT
CATTTATATTCAACCAATGAAACTAGAAATAAAGTTCTCAAAAAAAGAACACTGGATTTTATTC
CATCAAGTGACATTACGCCCTACAGTGGAAACAGAAGAAGCAGGGAATGTCCCAGCTAAGTGAA
AGAAGTACACAAAAACAAGATCACCTCTCAGGTGCACAAGAATGGCATCTGTGATATCATTGAA
TCCCAAATTCAGCACTTTCAAGCTCTGCAAACCTACAGAACGGCAAATGAAGTAGACGAGTAAA
ATTCAATTTTTTAATATCATGATCAGAATGAAAATCAATGAATCACAACTCTAAAATGATATGC
CAAGTTAAAATGATAAGAACAGATAAATAAATCATAAAATTTGAACTCGCCTGAAAATTTCTCA
CATCCATCATCAGTCAAACAACATCTGCTCAGGTTTAAATACAGCAGAGCATGAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.125802982
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to low-temperature stress (acting as miRNA sponges)
Other Information
References Yang et al., 2020