CircRNA Name |
AT1G03130_circ_g.13 |
ID in PlantcircBase |
ath_circ_000400 |
Alias |
At_ciR2585 |
Organism |
Arabidpsis thaliana |
Position |
chr1: 753994-754098 JBrowse» |
Reference genome |
TAIR10.38 |
Type |
e-circRNA
|
Identification method |
SMALT, Segemehl, circRNA_finder, find_circ, circseq_cup, CIRI-full |
Parent gene |
AT1G03130 |
Parent gene annotation |
Photosystem I reaction center subunit II-2, chloroplastic |
Parent gene strand |
- |
Alternative splicing |
AT1G03130_circ_g.1 AT1G03130_circ_g.2 AT1G03130_circ_g.3 AT1G03130_circ_g.4 AT1G03130_circ_g.5 AT1G03130_circ_g.6 AT1G03130_circ_g.7 AT1G03130_circ_g.8 AT1G03130_circ_g.9 AT1G03130_circ_g.10 AT1G03130_circ_g.11 AT1G03130_circ_g.12 AT1G03130_circ_g.14 AT1G03130_circ_g.15 AT1G03130_circ_g.16 |
Support reads |
2/3/6 |
Tissues |
siliques and seeds/leaf/leaf, aerial |
Exon boundary |
No-No
"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
|
Splicing signals |
GT-AG
The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
|
Number of exons covered |
AT1G03130.1:1
|