Detail information of AT1G49040_circ_g.2


General Information
CircRNA Name AT1G49040_circ_g.2
ID in PlantcircBase ath_circ_006405
Alias 1:18139994-18141528
Organism Arabidpsis thaliana
Position chr1: 18139994-18141528  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G49040
Parent gene annotation SCD1
Parent gene strand -
Alternative splicing AT1G49040_circ_g.1 AT1G49040_circ_g.3 AT1G49040_circ_g.4 AT1G49040_circ_g.5 AT1G49040_circ_g.6
Support reads 1/1
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G49040.2:1
AT1G49040.1:6
AT1G49040.3:5
AT1G49040.4:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGAGCCATCAAGGTGAATAAGAAATAGTGTATACCCAGTATGTCCTTTCAAAGTTGCTCGAAG
TTCAGAACCACGCAGACTTGGATCCCAAATTTTAACcttcgtcattttcccaaaagcgtagcaa
cccatccgccgagcctgcaagaaaatagacagcaacgcactaacgtaagctttgatgttatttt
gtgaaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCGTCATTTTCCCAAAAGCGTAGCAACCCATCCGCCGAGCCTGCAAGAAAATAGACAGCAAC
GCACTAACGTAAGCTTTGATGTTATTTTGTGAAAAAGATGCTACTTAATAAATCTTTTGAGAAC
TGATGGTAGATGAAATCAGCATGGACCTGTGATTATTCCTTTGTCAAACGGGGAGTATTCAACA
GATTGTACTGGCCCAGCATGGCATGCCAAAACAGCATCGCATGATCCTCTGGAGACAGACCACA
CTCTTGCTGTCCAGTCATCACTTCCAGTAATCAAGGTATCTTCGACCATTCGAATTGATCTGCA
GAATTGACACAGTTTGATCAAACAAGTTGCAGATTCTGAGATATTATAATATCCTACAACAATT
TAAAAAGTAATAAATAAATGGTTAATATCAATCAATGCCATAATACGATGAAGCAACCCTACAA
CCTGCAGATAGTCCATTATAAAATAAACTTGTAACGGAAGAAAAAGCCATACGTATATTGGCTT
TGTATTTATTTTTCGATCACAACAAAAAGAAACATGTTGTGCAAGATCAAGGGAAGGCTCACCG
TATCCATTTGGTATGCCCTTTCAGCTTATGCATTTGCTTTCCTGAACGAATATCCCATATATTT
GCAACCCTGATAATTATCCAATCATTATAGTTGAATCCGTGAGTGACATTCAATACAGCAAATC
CATTTGTTACTTATGAGTAATATAGCATACATACGTATCTCTGCCAGCAGCAGCCAAGATTCCT
GTGGAGTCATCATATTCTAGTGAAAGAATGGCACTAGAGCATCGGCCAACAGTTGCAACACACA
TATCGGTTCGAACGTCCCACATCTTAACTGTTCCATCATGTGCAGCAGTGAGGACACGTTCGCC
TGAAAGCATCTTGACACAACTTACCTGCAGAATAGTTTTGGATGTAGCATACAGTCAGAAAAAA
GGTAAGTCACCATAAGTATCGCTTCTTCTTTGGTGCCTTATGAGTTATGACTGACGGATAGTTA
ATAATTGGTCAACAATAGTAACTTAACAAATTCAAATTGTCGTTGAACATTCTGTCAAATGGGA
TTCTAATAACTGATAGTTATATGTTTATTTAATTATGTCCACGCCTATATGTTTATTTTGTGTT
GACCATTAATACTTCCCACTCATGAACTGTGTACTAATGACAGAAAAACACTAGAATGTAGTGG
AAACCTGTGAATCATGGCCTTTCAGTTCTTCTAGAAGTTGAGTTGTCTGTTTGTCCCATACGAT
CACAGATAGATCATCTGATCCTGAAACTATCTTTCCTCTGTCAGAGCTTATAGCACGCACGGTT
CTACATCAAAAGTTGAAAAGAAAACAAGAAAGGAAGCGCTGTTAAAGAAACCACCACATATGAA
AAATTAACAAAAAAAAACATAACTCCCGAGAGCCATCAAGGTGAATAAGAAATAGTGTATACCC
AGTATGTCCTTTCAAAGTTGCTCGAAGTTCAGAACCACGCAGACTTGGATCCCAAATTTTAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.137830299
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020